G52099


Basic Information

Item Value
gene id G52099
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48042047 ~ 48042350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58198
acttcaaacatctgctatctgagcagctaaccgatcgctgcagctgtacatagtctatcggtaaatagcccacccaattttacctacctcatccccatactgtttttatttatttacttttctgctcttttgcacaccaatatctctacctgtacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaactattcgcctacctcctcatgccttttgcacacaatgtatatagactctctttttttctactgtgttattgacttgttaattgtttactccatgtgtaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58198 True 304 lncRNA 0.38 1 48042047 48042350

Neighbor

gene id symbol gene type direction distance location
LOC110524199 LOC106573256 coding upstream 28701 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 63742 47949465 ~ 47978305 (+)
LOC110524181 LOC106573253 coding upstream 190888 47824536 ~ 47853332 (+)
LOC110520968 LOC106573253 coding upstream 217583 47789067 ~ 47824464 (+)
LOC110524160 LOC106573252 coding upstream 272238 47733556 ~ 47769809 (+)
LOC118964788 NA coding downstream 105049 48147399 ~ 48163741 (+)
LOC110524253 LOC106573262 coding downstream 214517 48256867 ~ 48289561 (+)
LOC110524291 LOC106573129 coding downstream 441535 48483885 ~ 48510535 (+)
LOC110524302 LOC106573126 coding downstream 509731 48552081 ~ 48590914 (+)
LOC110524313 LOC106573128 coding downstream 548670 48591020 ~ 48596608 (+)
G52086 NA non-coding upstream 11205 48024330 ~ 48030842 (+)
G52063 NA non-coding upstream 97245 47944470 ~ 47944802 (+)
G52048 NA non-coding upstream 105354 47936388 ~ 47936693 (+)
G52034 NA non-coding upstream 115714 47925960 ~ 47926333 (+)
G51983 NA non-coding upstream 146002 47895827 ~ 47896045 (+)
G52101 NA non-coding downstream 2407 48044757 ~ 48044972 (+)
G52102 NA non-coding downstream 3153 48045503 ~ 48045740 (+)
G52107 NA non-coding downstream 12779 48055129 ~ 48055350 (+)
G52169 NA non-coding downstream 90915 48133265 ~ 48133465 (+)
G52174 NA non-coding downstream 96013 48138363 ~ 48138596 (+)
G52080 NA other upstream 17089 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 783149 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1180583 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2049156 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2305267 45730241 ~ 45736780 (+)
G52324 NA other downstream 338192 48380542 ~ 48383257 (+)
G53181 NA other downstream 851147 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1995224 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3407472 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5623865 53632830 ~ 53705421 (+)

Expression


Co-expression Network