G52174


Basic Information

Item Value
gene id G52174
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48138363 ~ 48138596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58279
atcctatagtgtgtgtgtgtggcaggcttacaatgatggcaaaaaacaacatttgagagtgcgctgaccctgatGCTAGAGGGGGtatacagctggaggttgaatgtttgaaggggtacgggactataaaaagtttgggaaccactgatttaGGCTGTATATATTgccttcggaaagttttcagaccacttgatattttccatattttcttacgttacagccttattctagaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58279 True 234 lncRNA 0.41 1 48138363 48138596

Neighbor

gene id symbol gene type direction distance location
LOC110524199 LOC106573256 coding upstream 125017 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 160058 47949465 ~ 47978305 (+)
LOC110524181 LOC106573253 coding upstream 287204 47824536 ~ 47853332 (+)
LOC110520968 LOC106573253 coding upstream 313899 47789067 ~ 47824464 (+)
LOC110524160 LOC106573252 coding upstream 368554 47733556 ~ 47769809 (+)
LOC118964788 NA coding downstream 8803 48147399 ~ 48163741 (+)
LOC110524253 LOC106573262 coding downstream 118271 48256867 ~ 48289561 (+)
LOC110524291 LOC106573129 coding downstream 345289 48483885 ~ 48510535 (+)
LOC110524302 LOC106573126 coding downstream 413485 48552081 ~ 48590914 (+)
LOC110524313 LOC106573128 coding downstream 452424 48591020 ~ 48596608 (+)
G52169 NA non-coding upstream 4898 48133265 ~ 48133465 (+)
G52107 NA non-coding upstream 83013 48055129 ~ 48055350 (+)
G52102 NA non-coding upstream 92623 48045503 ~ 48045740 (+)
G52101 NA non-coding upstream 93391 48044757 ~ 48044972 (+)
G52099 NA non-coding upstream 96013 48042047 ~ 48042350 (+)
G52187 NA non-coding downstream 28018 48166614 ~ 48167114 (+)
G52148 NA non-coding downstream 34568 48173164 ~ 48187068 (+)
G52199 NA non-coding downstream 44088 48182684 ~ 48187583 (+)
G52200 NA non-coding downstream 44988 48183584 ~ 48188396 (+)
G52201 NA non-coding downstream 45531 48184127 ~ 48188957 (+)
G52080 NA other upstream 113405 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 879465 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1276899 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2145472 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2401583 45730241 ~ 45736780 (+)
G52324 NA other downstream 241946 48380542 ~ 48383257 (+)
G53181 NA other downstream 754901 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1898978 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3311226 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5527619 53632830 ~ 53705421 (+)

Expression


Co-expression Network