G52187


Basic Information

Item Value
gene id G52187
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48166614 ~ 48167114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58294
ATTAGTGTGTACAATGAATCATCTACTTCTTTCACAATTTCCTCTGTGACTACCTCACTCATGAGCCCAATTATTTTGCTTGGGATGTCATAAGATGTGCATATGGCATTGTGGGGAATTGTGCTTAAGGCACTTCgtagtactttaaaaaaaaatgttttacctttttttttaactaggcaagtcagttaagaacaaattcttattttcaatgacggccaaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaacttccaaccttccggttcctagtccaacgctccaagagagttggactagtaaccggaaggttccaagttcaaatccccgagctgacaaggtacaaatctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaatatgaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaaagtaataataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58294 True 501 lncRNA 0.40 1 48166614 48167114

Neighbor

gene id symbol gene type direction distance location
LOC118964788 NA coding upstream 2873 48147399 ~ 48163741 (+)
LOC110524199 LOC106573256 coding upstream 153268 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 188309 47949465 ~ 47978305 (+)
LOC110524181 LOC106573253 coding upstream 315455 47824536 ~ 47853332 (+)
LOC110520968 LOC106573253 coding upstream 342150 47789067 ~ 47824464 (+)
LOC110524253 LOC106573262 coding downstream 89753 48256867 ~ 48289561 (+)
LOC110524291 LOC106573129 coding downstream 316771 48483885 ~ 48510535 (+)
LOC110524302 LOC106573126 coding downstream 384967 48552081 ~ 48590914 (+)
LOC110524313 LOC106573128 coding downstream 423906 48591020 ~ 48596608 (+)
cttnbp2 cttnbp2 coding downstream 468381 48635495 ~ 48706569 (+)
G52174 NA non-coding upstream 28018 48138363 ~ 48138596 (+)
G52169 NA non-coding upstream 33149 48133265 ~ 48133465 (+)
G52107 NA non-coding upstream 111264 48055129 ~ 48055350 (+)
G52102 NA non-coding upstream 120874 48045503 ~ 48045740 (+)
G52101 NA non-coding upstream 121642 48044757 ~ 48044972 (+)
G52148 NA non-coding downstream 6050 48173164 ~ 48187068 (+)
G52199 NA non-coding downstream 15570 48182684 ~ 48187583 (+)
G52200 NA non-coding downstream 16470 48183584 ~ 48188396 (+)
G52201 NA non-coding downstream 17013 48184127 ~ 48188957 (+)
G52222 NA non-coding downstream 52340 48219454 ~ 48221949 (+)
G52080 NA other upstream 141656 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 907716 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1305150 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2173723 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2429834 45730241 ~ 45736780 (+)
G52324 NA other downstream 213428 48380542 ~ 48383257 (+)
G53181 NA other downstream 726383 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1870460 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3282708 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5499101 53632830 ~ 53705421 (+)

Expression


Co-expression Network