G52199


Basic Information

Item Value
gene id G52199
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48182684 ~ 48187583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58306
gtgttatataagtattcatacacatagctcatataaacaaagacattccgtcgtaagaacacatacacccagccacaagactgaccccctctattGGTCGGATGCTCAGGATAAggctctgctgtgcaccaatggggcttctgctctggctagagcaaggcccgcctccaaccctccgaccagtcaagaagaccgaaacgacaagactccacctactttattctatgtataaaaatgaatgtaaccgttgtataaggcctctttttcacctggctccttgacgagttatgtgaactaggtccgtgcacgtaaaactgcgggacaagatatctctgactcattaaaactgtcttttgttacaactgaaatccactctgtccagcgtccgtgatttggtctcaactctccagtatttaaacactaacagaacttggtagcagagtttggttattcttgaattcgatctattataagttagtgtgagaggacgagactgatcacggctaaaaaatcagacggaagagtgacttccccagccattcatcttgcctcaggaaatctCTCTATATaaggtgagcagagcccgttatatcgaaatctgcatattgtattatagcctaaaccaaattttgatcagaaagtactgggcgtgagtatgaatcggtgcccaaattttttacataagaacctaagacattgattaaagatatcttgttttgtaaaaaaa
>TU58307
gtgttatataagtattcatacacatagctcatataaacaaagacattccgtcgtaagaacacatacacccagccacaagactgaccccctctattGGTCGGATGCTCAGGATAAggctctgctgtgcaccaatggggcttctgctctggctagagcaaggcccgcctccaaccctccgaccagtcaagaagaccgaaacgacaagactactttattctatgtataaaaatgaatgtaaccgttgtataaggcctctttttcacctggctccttgacgagttatgtgaactaggtccgtgcacgtaaaactgcgggacaagatatctctgactcattaaaactgtcttttgttacaactgaaatccactctgtccagcgtccgtgatttggtctcaactctccagtatttaaacactaacagaacttggtagcagagtttggttattcttgaattcgatctattataagttagtgtgagaggacgagactgatcacggctaaaaaatcagacggaagagtgacttccccagccattcatcttgcctcaggaaatctCTCTATATaaggtgagcagagcccgttatatcgaaatctgcatattgtattatagcctaaaccaaattttgatcagaaagtactgggcgtgagtatgaatcggtgcccaaattttttacataagaacctaagacattgattaaagatatcttgttttgtaaaaaaa

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU58306 False 727 lncRNA 0.36 2 48182684 48187583
TU58307 True 721 lncRNA 0.41 2 48182684 48187583

Neighbor

gene id symbol gene type direction distance location
LOC118964788 NA coding upstream 18943 48147399 ~ 48163741 (+)
LOC110524199 LOC106573256 coding upstream 169338 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 204379 47949465 ~ 47978305 (+)
LOC110524181 LOC106573253 coding upstream 331525 47824536 ~ 47853332 (+)
LOC110520968 LOC106573253 coding upstream 358220 47789067 ~ 47824464 (+)
LOC110524253 LOC106573262 coding downstream 69284 48256867 ~ 48289561 (+)
LOC110524291 LOC106573129 coding downstream 296302 48483885 ~ 48510535 (+)
LOC110524302 LOC106573126 coding downstream 364498 48552081 ~ 48590914 (+)
LOC110524313 LOC106573128 coding downstream 403437 48591020 ~ 48596608 (+)
cttnbp2 cttnbp2 coding downstream 447912 48635495 ~ 48706569 (+)
G52187 NA non-coding upstream 15570 48166614 ~ 48167114 (+)
G52174 NA non-coding upstream 44088 48138363 ~ 48138596 (+)
G52169 NA non-coding upstream 49219 48133265 ~ 48133465 (+)
G52107 NA non-coding upstream 127334 48055129 ~ 48055350 (+)
G52102 NA non-coding upstream 136944 48045503 ~ 48045740 (+)
G52222 NA non-coding downstream 31871 48219454 ~ 48221949 (+)
G52277 NA non-coding downstream 136996 48324579 ~ 48324812 (+)
G52284 NA non-coding downstream 145686 48333269 ~ 48333547 (+)
G52289 NA non-coding downstream 152677 48340260 ~ 48340842 (+)
G52292 NA non-coding downstream 155515 48343098 ~ 48343350 (+)
G52080 NA other upstream 157726 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 923786 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1321220 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2189793 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2445904 45730241 ~ 45736780 (+)
G52324 NA other downstream 192959 48380542 ~ 48383257 (+)
G53181 NA other downstream 705914 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1849991 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3262239 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5478632 53632830 ~ 53705421 (+)

Expression


Co-expression Network