G52222


Basic Information

Item Value
gene id G52222
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48219454 ~ 48221949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58335
TGAAAACTTTTATTGTTTGCTTTGAATAAAAACCCCAGTCCACTGAGGCCCACAGAGAGGACGTCATGCTGGGTTTAGAGACAAAACGGTTAGAAAAATGTACCCAAATAAACAAGCTTAAAGTCTGTATATAAATTACATTTGATGCTCAAACAAACTACCCCCAGCACAGACATTTTAGTAAGTTATTGCATTGTATCCTTGCTGTGTCATGATAGTGGCTTGAGCCAGACCCTCATGCAGGCTTCTGTGCAACAATGAAAAAAATGGAGATACAGGACATCCCTTTGAATTAGGCACTTGATTCTATGGGTGAACCTAAACTGTGTTGCCTCACTTCCTCTTGtcttctcaaaacacattggtACAGAAGAACAGAGGTTCCTCCCCTCTGATCTTCTGctccaatgtgttttgagaagaCAAGAGGAAGTGAGGAATCAAGGCAATACAGTTTGTTGTTCACCCCATCCCACAACCCTACTGTACCACCCTTCATCTTAGACAAGAGATGCTTTTAAGGCTGCATTTATACAGGcaaccaattctgatctttttcagagctgctCCAAATTGGTCAACAGACCAATTAGTAAAcattatcagaattgggctgcctgtataAAACGCAGCCTAAGACATTTGAGCAACGCCCCCCCGTTGACTTGGCGTCAACTCCCGTCACTCAATAAAATGTACCGATGTAGACATCTATACTTCTGAATAAATCTAGTACATTATCAAACAATAACCTAGTTCATCGAACAGCACTGTGCAAAAGAACTTCAGAGTACACCAAAATGGGCACAAGTTCTTAGAATAAATTCCAATTTAAGTCAACTTTATTTAACTTGTCTATTCACTCCGTTATTAGTTCAAATGTAGTATTCTAGTAATTCACTGGCATTAAGGCACAACAAGAAATTCATCTTAACTTCCTGaggacacaaaaaaaaaaaaaaaaaacgcaatACTGAACTTGTACTTTTTAACACCTGTTCACACGGGGTGGGGGGTATAACATCGTCGgtatcatcccaaatggcaccctagtccctgtaacgtgaactacttttgaccagagccaagcagtgcactatatagggctgccatttgggactccgCAGTTAGCAGAACTGGAATACAATCTCAGGATTAACACATTAACAGAAGACACCATTATATAAAACAACTTCAATAGTAAAAAGTGCAACTGTGTCACGTTTCCTGCAAGATATAAAATCCCAAATCTAGTAGTTTCTCTATTTACGTACTTATTTAATTCATGCCTGGCCAAGATAGCATCAGCATCAGACATTCAGTCAAAGTTCATTACTTCCTATCAACCAACCTTCACCCAATTTGTGCCCGATCATTCAAGCCCTCCAAAACATTAGCCTCAATATTGCTATGTAACTAATACCTAATAAGCTAAAACCAAAAGGGCTCTACAATTCAAATATTTTAACCAATTTTTAACTGAACATTTAGGCTGACATCACTTGTGTAACCTCAATCAGGTTATTGTTTCTCTCCGTCAGACATCTCAAGTACTGTTGGTGGGTCAAATTCTTTCTGGCATTCTGGTTTCTTTGAGAGGAACAAGGATGTGGAGTTCAGGATGAGGTTTTAAACTGACTGACAAAAAGAGGTAAAAAGGGAACAACAATTTGGAAAGCTCCCTAGAAATGTTAGAAACCGAAATGTGGCCTAAATGTCAGGAAGAAGCATACTTAGATGGCCTGCTTTAGCGAGCTCTTGTAGCAGTTTACATAGATTACGCTAGAGATATAACCGTAGCAAACAGCAGCATTGTGCAACTCTAGTTACACAATACAAGTAGCCTCGAGTACAGAGCAATCTACAGAAAATGTTCTTCTGACCTATGATCCATCTTTCACCAATACCTAGTTATGTAaccagagttAAGAGTATAGCCAAGTTCATCTAGCACCATCACTAGTGAAGTGGAAGTAAATAAAACAGAATCTAATTTACAAAAACTTGATAGAGCTAAAAATCATGGCTAGCTTAGAGAAGTGGGCTAGATGGATAGCTAGCAGACTAGGTACAGGTACAGTTTGTGTGGTTGAAAAATTCACAGAAAGCTGTGACAGATCGCACTGGCTATTTTGGTACATTACAGGTTACCCCAAAAAATGAAGCTGTCAGCGATCTTCAGTCATACGGCCTTCTGTTAcaagaagaaaataaaaaaaaactcatTGCTGAAAAGGACATCCCTCAAATATTTTCTATACACAATTTAGCCACCTGGAAATTGTTTTGAAGAGATTGATGGATTGCATCATTTCCATTATTAAAAGATATGGAAAAGTGGCATTCAAGCAGTCTACCCCAGTGATGTTGACAAATATACAATCTTTCAGTCAAAAGTATAAAACAAACTATTTCTAAAGATGAGGCGTCGCCCCTCTGGATCTGTCCTCCAGGTGTACTACGCAGCCACGGGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58335 True 2476 lncRNA 0.39 2 48219454 48221949

Neighbor

gene id symbol gene type direction distance location
LOC118964788 NA coding upstream 55713 48147399 ~ 48163741 (+)
LOC110524199 LOC106573256 coding upstream 206108 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 241149 47949465 ~ 47978305 (+)
LOC110524181 LOC106573253 coding upstream 368295 47824536 ~ 47853332 (+)
LOC110520968 LOC106573253 coding upstream 394990 47789067 ~ 47824464 (+)
LOC110524253 LOC106573262 coding downstream 34918 48256867 ~ 48289561 (+)
LOC110524291 LOC106573129 coding downstream 261936 48483885 ~ 48510535 (+)
LOC110524302 LOC106573126 coding downstream 330132 48552081 ~ 48590914 (+)
LOC110524313 LOC106573128 coding downstream 369071 48591020 ~ 48596608 (+)
cttnbp2 cttnbp2 coding downstream 413546 48635495 ~ 48706569 (+)
G52201 NA non-coding upstream 30497 48184127 ~ 48188957 (+)
G52200 NA non-coding upstream 31058 48183584 ~ 48188396 (+)
G52199 NA non-coding upstream 31871 48182684 ~ 48187583 (+)
G52148 NA non-coding upstream 32386 48173164 ~ 48187068 (+)
G52187 NA non-coding upstream 52340 48166614 ~ 48167114 (+)
G52277 NA non-coding downstream 102630 48324579 ~ 48324812 (+)
G52284 NA non-coding downstream 111320 48333269 ~ 48333547 (+)
G52289 NA non-coding downstream 118311 48340260 ~ 48340842 (+)
G52292 NA non-coding downstream 121149 48343098 ~ 48343350 (+)
G52300 NA non-coding downstream 132200 48354149 ~ 48354514 (+)
G52080 NA other upstream 194496 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 960556 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1357990 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2226563 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2482674 45730241 ~ 45736780 (+)
G52324 NA other downstream 158593 48380542 ~ 48383257 (+)
G53181 NA other downstream 671548 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1815625 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3227873 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5444266 53632830 ~ 53705421 (+)

Expression


Co-expression Network