G52956


Basic Information

Item Value
gene id G52956
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48469168 ~ 48510478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU59132
CTCATCCTTGGCTTATCTCAAATAGTCTGATCATTGTAATATATTTTTGACAAAAACAAAATTGCACATGAGAACATTTAAACTAGATGTTTGTGACTATCCTCGCCTGGTGATGTGTTTAAAGGGTCTTCCCCGCTGATCGACTGTCTGGCAGAGAGGATATCACAGCATTCAGCAGTCTCAAAAATACATGGGACAATGATGAGGGGCCAAATAAATACTTTTGCAGGCAGCCATTTTGACGTCACCATGGCCAGCCCTTTAATTTTCATGCGATTGTtaatgttttttgttttaaatCACTTCTTAAAACAAATAGCGAAACAAACAGGTAATTTGATCTATTCCCTTGGGAGACACTGGAACAAAAAAAGTTACATACTGTAGAAGGCAGCAGCGAGCGTCACTATTTGGGGAAAACCTCCTTTAAAAACACTCAAGACAGACGCACATCAACATCCCAGTTAGGATGCCATAGTCAGTCAAAAGTCTTCAACCCCGTACGTAAAGGTAAAAGGTCAAAAATAAAATTAAGTGACATGAGAAAAAAGGAACATGTAAATTAAAAAGGGAAAAACAAAGACGTGTCACTTAATTAGCAGGTCTATACTTACGTACATGATGTAAGGTGATATAACCCTGAGTGCGTGGCCCAGAATTTGGACAGGGAGGGAGTTCATTCATTGGCTTCGGTGATGAGCGAGCAACCGTCCTGCCCACAGACGTCTCCCGGCTGGAGACAGTCCTACTGCGGGAGTGTCTGCCTCTAGagtctgcccccctctctctggcTAACCTAGGCAGTGGTCTGGTCTGATTGGACTTAgattgaacttttttttttttttttttttttttgagggggtgggggtggtTATCCTCAGTGatcctctccctccattttgCTCCAGACTAAATTTAGGGGCTCACTTAGACTCACTCCCACCTCTTGACATTTGTCAACAAGTTTCCTCAGTTTATCAGTTTTACCTCCCTCCGCAGCTTCAAACAGCAGGCgctggaaagggagagaggagggggggggcctcctaatgcaagacaatgctagacctcatgtggctggagtgtgtcagcagtgcCTGCAAGAGGAtagcattg

Function

NR:

description
zinc finger C3H1 domain-containing protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59132 True 1119 lncRNA 0.44 2 48469168 48510478

Neighbor

gene id symbol gene type direction distance location
LOC110524285 LOC106573130 coding downstream 5513 48440247 ~ 48463655 (-)
LOC110524273 LOC106573264 coding downstream 72787 48313665 ~ 48396381 (-)
LOC110524264 LOC106573263 coding downstream 164339 48291626 ~ 48304829 (-)
LOC110524242 NA coding downstream 222120 48219440 ~ 48247048 (-)
LOC110524212 LOC106573258 coding downstream 345812 48071829 ~ 48123356 (-)
nup160 nup160 coding upstream 87700 48598178 ~ 48623416 (-)
LOC110532369 LOC100136364 coding upstream 196504 48706982 ~ 48748537 (-)
LOC110524343 LOC106573121 coding upstream 304327 48814805 ~ 48892487 (-)
LOC110524359 capza2 coding upstream 391124 48901602 ~ 48958061 (-)
LOC110532382 LOC106573120 coding upstream 461102 48971580 ~ 49044257 (-)
G52948 NA non-coding downstream 669 48448430 ~ 48468499 (-)
G52922 NA non-coding downstream 5128 48411508 ~ 48464040 (-)
G52881 NA non-coding downstream 111426 48357506 ~ 48357742 (-)
G52879 NA non-coding downstream 117283 48351570 ~ 48351885 (-)
G52877 NA non-coding downstream 120125 48348681 ~ 48349043 (-)
G53008 LOC106573126 non-coding upstream 45341 48555819 ~ 48557902 (-)
G53524 NA non-coding upstream 602535 49113013 ~ 49113261 (-)
G53540 NA non-coding upstream 623463 49133941 ~ 49134182 (-)
G53541 NA non-coding upstream 624118 49134596 ~ 49135356 (-)
G53565 NA non-coding upstream 659694 49170172 ~ 49170575 (-)
LOC110524104 LOC106573248 other downstream 907959 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 1090625 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 1179487 47288939 ~ 47289681 (-)
G51214 NA other downstream 1350135 47064774 ~ 47236625 (-)
G55408 NA other upstream 1901156 50411634 ~ 50412128 (-)
G55627 NA other upstream 2254885 50765363 ~ 50767431 (-)
LOC110524514 borcs5 other upstream 2267269 50777716 ~ 50792069 (-)
G56372 NA other upstream 2890249 51400727 ~ 51412569 (-)

Expression


Co-expression Network