G52431


Basic Information

Item Value
gene id G52431
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48573919 ~ 48574259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58561
caataatgtttgtaccatgttttgtgctgctaccatgtatCAGGTATGAAAGtaaaacccagatgcagacaacgttgaaataacaatggtttaatagtccaacaggggcaggcaatagacaggtcaaggcaggcaggggtcagtaaaccagaggtggggcaacggtactggacggcaggcaggctcagggtcagggtaggcagaggtcaacaatccagaggtggggcaaaggtacaggtcggcaggcaggctcagggtcagggtaggcagaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58561 True 274 lncRNA 0.52 2 48573919 48574259

Neighbor

gene id symbol gene type direction distance location
LOC110524291 LOC106573129 coding upstream 64275 48483885 ~ 48510535 (+)
LOC110524253 LOC106573262 coding upstream 284358 48256867 ~ 48289561 (+)
LOC118964788 NA coding upstream 410178 48147399 ~ 48163741 (+)
LOC110524199 LOC106573256 coding upstream 560573 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 595614 47949465 ~ 47978305 (+)
LOC110524313 LOC106573128 coding downstream 16761 48591020 ~ 48596608 (+)
cttnbp2 cttnbp2 coding downstream 61236 48635495 ~ 48706569 (+)
LOC110532376 NA coding downstream 184780 48759039 ~ 48798504 (+)
LOC110524349 LOC106573123 coding downstream 230648 48804907 ~ 48815013 (+)
LOC110524405 LOC106573116 coding downstream 861503 49435762 ~ 49440232 (+)
G52395 NA non-coding upstream 33031 48530447 ~ 48540888 (+)
G52300 NA non-coding upstream 219405 48354149 ~ 48354514 (+)
G52292 NA non-coding upstream 230569 48343098 ~ 48343350 (+)
G52289 NA non-coding upstream 233077 48340260 ~ 48340842 (+)
G52390 NA non-coding downstream 23937 48598196 ~ 48598851 (+)
G52450 NA non-coding downstream 52339 48626598 ~ 48626797 (+)
G52546 st7 non-coding downstream 243489 48817748 ~ 48819992 (+)
G53252 NA non-coding downstream 491435 49065694 ~ 49079733 (+)
G53308 NA non-coding downstream 515861 49090120 ~ 49090352 (+)
G52324 NA other upstream 190662 48380542 ~ 48383257 (+)
G52080 NA other upstream 548961 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1315021 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1712455 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2581028 45992273 ~ 45992891 (+)
G53181 NA other downstream 319238 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1463315 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 2875563 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5091956 53632830 ~ 53705421 (+)
G59031 NA other downstream 5413881 53988140 ~ 53988597 (+)

Expression


Co-expression Network