G52390


Basic Information

Item Value
gene id G52390
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48598196 ~ 48598851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58520
ACTTTAATTGCATTACAATTTACAACAAACATGATTGTAAAAGTTCACAGGCAGCAAAGTACAAAAGAACATGTTTCAATATgattacaatgtaaaaaatacattGTCTCCAGAGGTGAAAACACCTTGAATTGTTAGTTGGAACTCagacaatatatacagtacatttgagCAACAAGCAGGTAAGATGCACTCTTTTCCTGAACTCAATCTGGTGAGGTTCATACAAAGTGTTTATTTGAACCTTAATACAAAAATAGGTGTATTTATCTTCTTCCAGAGTCATGACAGTAAGCGCACCATATGGAGGGGCAGTGCTATGGCTCTTTCAATTAGTCTTCCCTTGATTCATCACATTCTTTCCAATACGGTTAAGGTGAGGAGGAAAGATTAATTGAGATTGAGCCTGTGTTCTGACTGAGGTGCTACTGGGCCTGGAGTCTTCGCCTTGTTGTCTGGTCCACCAGTTTGTGGTAGTCATTCAGCTTGTCCTGCAGTTTGTTGTATATACTGGCATTAGTCTGGGTCTCGTTGAGCGCCTGAAGAAGCTGGTCGATGGAAGTGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58520 True 566 lncRNA 0.40 2 48598196 48598851

Neighbor

gene id symbol gene type direction distance location
LOC110524313 LOC106573128 coding upstream 1588 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 7282 48552081 ~ 48590914 (+)
LOC110524291 LOC106573129 coding upstream 88552 48483885 ~ 48510535 (+)
LOC110524253 LOC106573262 coding upstream 308635 48256867 ~ 48289561 (+)
LOC118964788 NA coding upstream 434455 48147399 ~ 48163741 (+)
cttnbp2 cttnbp2 coding downstream 36644 48635495 ~ 48706569 (+)
LOC110532376 NA coding downstream 160188 48759039 ~ 48798504 (+)
LOC110524349 LOC106573123 coding downstream 206056 48804907 ~ 48815013 (+)
LOC110524405 LOC106573116 coding downstream 836911 49435762 ~ 49440232 (+)
kitlg scf coding downstream 1067681 49666532 ~ 49702958 (+)
G52431 NA non-coding upstream 23937 48573919 ~ 48574259 (+)
G52395 NA non-coding upstream 57308 48530447 ~ 48540888 (+)
G52300 NA non-coding upstream 243682 48354149 ~ 48354514 (+)
G52292 NA non-coding upstream 254846 48343098 ~ 48343350 (+)
G52450 NA non-coding downstream 27747 48626598 ~ 48626797 (+)
G52546 st7 non-coding downstream 218897 48817748 ~ 48819992 (+)
G53252 NA non-coding downstream 466843 49065694 ~ 49079733 (+)
G53308 NA non-coding downstream 491269 49090120 ~ 49090352 (+)
G53318 NA non-coding downstream 508654 49107505 ~ 49107861 (+)
G52324 NA other upstream 214939 48380542 ~ 48383257 (+)
G52080 NA other upstream 573238 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1339298 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1736732 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2605305 45992273 ~ 45992891 (+)
G53181 NA other downstream 294646 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1438723 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 2850971 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5067364 53632830 ~ 53705421 (+)
G59031 NA other downstream 5389289 53988140 ~ 53988597 (+)

Expression


Co-expression Network