G52546 (st7)


Basic Information

Item Value
gene id G52546
gene name st7
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48817748 ~ 48819992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58684
GGCTTTAGCGAAGACTCCCATGAGCTCGGGGAACTGGTGTGTGAGGAGGGCCAGCATGGCAGTGAAGGAGCAGAGACCAGCCGTGAACAAGATGAAGAATGGCAGTTCCTTCTTAGGGTACACCGACACCTCATGAAACACTGCTTCCACTTGGTAGCAGCTCTCTGTCTGCGGTCTCGGTGCAGATGGGGTATGGGTAGAAGAGGTGGCCTTTCTCCAGAGGGTAGGGGATCATTCTAAAAGCTGGGGAGGACAGAAGACAAAGCATTCAGAATAGGTACAGTCATGTACAAATGTTTGTGTTGAGCCAAGaagtgggtgggggtgggggggtctggTTATGCATCAAAA
>TU58686
GGCTTTAGCGAAGACTCCCATGAGCTCGGGGAACTGGTGTGTGAGGAGGGCCAGCATGGCAGTGAAGGAGCAGAGACCAGCCGTGAACAAGATGAAGAATGGCAGTTCCTTCTTAGGGTACACCGACACCTCATGAAACACTGCTTTTGGTAGCAGCTCTCTGTCTGCGGTCTCGGTGCAGATGGGGTATGGGTAGAAGAGGTGGCCTTTCTCCAGAGGGTAGGGGATCATTCTAAAAGCTGGGGAGGACAGAAGACAAAGCATTCAGAATAGGTACAGTCATGTACAAATGTTTGTGTTGAGCCAAGaagtgggtgggggtgggggggtctggTTATGCATCAAAA

Function

symbol description
st7 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and liver. Orthologous to human ST7 (suppression of tumorigenicity 7).

NR:

description
PREDICTED: suppressor of tumorigenicity 7 protein isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58684 False 351 lncRNA 0.52 2 48817748 48819992
TU58686 True 347 lncRNA 0.52 2 48817748 48819992

Neighbor

gene id symbol gene type direction distance location
LOC110524349 LOC106573123 coding upstream 2735 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 19244 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 111179 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 221140 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 226834 48552081 ~ 48590914 (+)
LOC110524405 LOC106573116 coding downstream 615770 49435762 ~ 49440232 (+)
kitlg scf coding downstream 846540 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 1003918 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 1027628 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 1217531 50037523 ~ 50184257 (+)
G52450 NA non-coding upstream 190951 48626598 ~ 48626797 (+)
G52390 NA non-coding upstream 218897 48598196 ~ 48598851 (+)
G52431 NA non-coding upstream 243489 48573919 ~ 48574259 (+)
G52395 NA non-coding upstream 276860 48530447 ~ 48540888 (+)
LOC110524291 LOC106573129 non-coding upstream 307213 48483885 ~ 48510535 (+)
G53252 NA non-coding downstream 245702 49065694 ~ 49079733 (+)
G53308 NA non-coding downstream 270128 49090120 ~ 49090352 (+)
G53318 NA non-coding downstream 287513 49107505 ~ 49107861 (+)
G53349 NA non-coding downstream 350349 49170341 ~ 49170549 (+)
G53352 NA non-coding downstream 354394 49174386 ~ 49174596 (+)
G52324 NA other upstream 434491 48380542 ~ 48383257 (+)
G52080 NA other upstream 792790 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1558850 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1956284 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2824857 45992273 ~ 45992891 (+)
G53181 NA other downstream 73505 48893497 ~ 48893912 (+)
LOC110524575 fgf3 other downstream 2629830 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4846223 53632830 ~ 53705421 (+)
G59031 NA other downstream 5168148 53988140 ~ 53988597 (+)

Expression


Co-expression Network