G53541


Basic Information

Item Value
gene id G53541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49134596 ~ 49135356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU59764
ctgttcttgccatggtcttttaccaaatagttgagaacaagttctcatatacaactgcgacctgcccaagataaagcaaagcagtgcgacacaaacaacaacacagagttacacatggaataaacaagcgtacagacAATAACACAATCGAAAAAAAtaacgtctatatacagtgtgtgcaaatggcgggaggaggtaaggcaataaataggtcataatagcgaagtaattacaatttagcaaattaacactggagtgatagatgagcagatgatgatgtgcaagtaggaataccggtgtgcaaaagagcagaaaagtaaataaaaacaatatggtgatgaggtaggtagattggctgggctgtttacagatgggctatgaacagctgcagcgatcggttagctgctctgaTAGTTGATGCTTAAATTTAGTGAGGGAAAAATAAGTCTCCAGCATCAGCATCAccattcgttccagtcattggcagcagagaactggaaggaaaggcggccaaagggggtgttggctttggggatgaccagtgagatatacctgctggagcgcgtgctacgagtgggtgttgttatcatgactagtgagctgagataaggcagagcttaacctagcatagacttatagacgacctggagccagtgggtctggcgactaatatgtagcgagggccagcgaGTGTGagcagcaaacggttgaaaagaatgcatttggttttactagcatttaagagcagttggaggctacgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59764 True 761 lncRNA 0.46 1 49134596 49135356
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110524381 cav2 coding downstream 29861 49098552 ~ 49104735 (-)
LOC110524368 LOC106573119 coding downstream 53882 49067489 ~ 49080714 (-)
LOC110532382 LOC106573120 coding downstream 90339 48971580 ~ 49044257 (-)
LOC110524359 capza2 coding downstream 176535 48901602 ~ 48958061 (-)
LOC110524343 LOC106573121 coding downstream 242109 48814805 ~ 48892487 (-)
LOC110524388 LOC106573117 coding upstream 44776 49180132 ~ 49208517 (-)
cbpa1 cbpa1 coding upstream 89356 49224712 ~ 49228631 (-)
LOC110532387 tmtc3 coding upstream 628639 49763995 ~ 49822972 (-)
LOC110524413 LOC106573141 coding upstream 713022 49848378 ~ 49876492 (-)
LOC110524441 LOC106573156 coding upstream 1125048 50260404 ~ 50270301 (-)
G53540 NA non-coding downstream 414 49133941 ~ 49134182 (-)
G53524 NA non-coding downstream 21335 49113013 ~ 49113261 (-)
G52974 NA non-coding downstream 533181 48497012 ~ 48601415 (-)
G53008 LOC106573126 non-coding downstream 576694 48555819 ~ 48557902 (-)
G52985 LOC106573129 non-coding downstream 628505 48505510 ~ 48506091 (-)
G53565 NA non-coding upstream 34816 49170172 ~ 49170575 (-)
G53537 NA non-coding upstream 42493 49177849 ~ 49202748 (-)
G53651 NA non-coding upstream 143667 49279023 ~ 49279344 (-)
G53652 NA non-coding upstream 146304 49281660 ~ 49281864 (-)
G53655 NA non-coding upstream 147530 49282886 ~ 49283092 (-)
LOC110524264 LOC106573263 other downstream 830460 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 1573387 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 1756053 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 1844915 47288939 ~ 47289681 (-)
G55408 NA other upstream 1276278 50411634 ~ 50412128 (-)
G55627 NA other upstream 1630007 50765363 ~ 50767431 (-)
LOC110524514 borcs5 other upstream 1642391 50777716 ~ 50792069 (-)
G56372 NA other upstream 2265371 51400727 ~ 51412569 (-)
G56764 NA other upstream 2611261 51746617 ~ 51747220 (-)

Expression

G53541 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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G53541 Expression in each Bioproject

Bar chart with 18 bars.
G53541 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network