G53352


Basic Information

Item Value
gene id G53352
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49174386 ~ 49174596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU59565
ATCTCTATGATATATTAACTGACCCTCCACTGTACCTCATTAGACAGTTTAACATAAGCAGAGCATGTTGTGTGGAATCCACTGAGGGGATGTGATGTATGGTAGACAGGCAGCTTTTTTCCACTTTTACACTGACAGGTGCTGCTGTCAGCAGGGGTAGGATTAGTTAGAGAAGGGATGTTTTCAACGGAGACgccccacagacacagac

Function

NR:

description
PREDICTED: charged multivesicular body protein 4b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59565 True 211 lncRNA 0.40 1 49174386 49174596

Neighbor

gene id symbol gene type direction distance location
LOC110524349 LOC106573123 coding upstream 359373 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 375882 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 467817 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 577778 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 583472 48552081 ~ 48590914 (+)
LOC110524405 LOC106573116 coding downstream 261166 49435762 ~ 49440232 (+)
kitlg scf coding downstream 491936 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 649314 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 673024 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 862927 50037523 ~ 50184257 (+)
G53349 NA non-coding upstream 3837 49170341 ~ 49170549 (+)
G53318 NA non-coding upstream 66525 49107505 ~ 49107861 (+)
G53308 NA non-coding upstream 84034 49090120 ~ 49090352 (+)
G53252 NA non-coding upstream 94653 49065694 ~ 49079733 (+)
G52546 st7 non-coding upstream 354394 48817748 ~ 48819992 (+)
G53375 NA non-coding downstream 28699 49203295 ~ 49264079 (+)
G53382 cpa1 non-coding downstream 49942 49224538 ~ 49226884 (+)
G53654 NA non-coding downstream 107858 49282454 ~ 49282965 (+)
G53659 NA non-coding downstream 110683 49285279 ~ 49285543 (+)
G53678 NA non-coding downstream 126024 49300620 ~ 49300869 (+)
G53181 NA other upstream 280474 48893497 ~ 48893912 (+)
G52324 NA other upstream 791129 48380542 ~ 48383257 (+)
G52080 NA other upstream 1149428 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1915488 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 2312922 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 2275226 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4491619 53632830 ~ 53705421 (+)
G59031 NA other downstream 4813544 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4870253 54044813 ~ 54089850 (+)

Expression


Co-expression Network