G53537


Basic Information

Item Value
gene id G53537
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49177849 ~ 49202748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU59759
tccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggttgcaaagttcaagggggccgaatactttcgcaaggcactgtaactacctTGGGTTGTTCTCGTATCATTCGGCCTGTTGCTTTCTCTCTAGAATGTACGACTGATTACAGACATCCAACTCGAAGCAGCAGTATAATAGCTATAACCTTACAAGAAATGATGCTTTGTTTGCAGTGTTTCTTTTCCGCTAGAAGCAGCTCTTCATTGTTGTTACAGGCGGATAAGTATCTGACTATGCCAAGTGGCTGACTGATTCTCTCCAACACAGTCCTGGAGTACCCATGGGGAACGCAGGTTTTCACAAGTGACACTTTTATGGAAAACATCACTGAAATGTGAAGGCAGGTGATGTCATATCTATGCGATCGACAGAACGTCTTCAAATTACGACGACTCTTGAGGACCAACGAAATGAGAAAGTACTTTTCTTTCTACTGTGGTGTCTAATGACCTGCGTCCTCCTTTCTTTCCTGCTGTCTTTTTTTGTATAATAATATTGTCTTCTCAATCATTTTCCATTTGCTTTCCTTTTTGTTTCTTGCTCAGTGAAAAGCACTTTATGATATTTTCTCCTCACGCTCTTACAACCTAATAAAGATTTTTGCTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU59759 True 703 lncRNA 0.48 2 49177849 49202748

Neighbor

gene id symbol gene type direction distance location
LOC110524381 cav2 coding downstream 73114 49098552 ~ 49104735 (-)
LOC110524368 LOC106573119 coding downstream 97135 49067489 ~ 49080714 (-)
LOC110532382 LOC106573120 coding downstream 133592 48971580 ~ 49044257 (-)
LOC110524359 capza2 coding downstream 219788 48901602 ~ 48958061 (-)
LOC110524343 LOC106573121 coding downstream 285362 48814805 ~ 48892487 (-)
cbpa1 cbpa1 coding upstream 21964 49224712 ~ 49228631 (-)
LOC110532387 tmtc3 coding upstream 561247 49763995 ~ 49822972 (-)
LOC110524413 LOC106573141 coding upstream 645630 49848378 ~ 49876492 (-)
LOC110524441 LOC106573156 coding upstream 1057656 50260404 ~ 50270301 (-)
LOC110524445 LOC106573110 coding upstream 1164818 50367566 ~ 50374531 (-)
G53565 NA non-coding downstream 7274 49170172 ~ 49170575 (-)
G53541 NA non-coding downstream 42493 49134596 ~ 49135356 (-)
G53540 NA non-coding downstream 43667 49133941 ~ 49134182 (-)
G53524 NA non-coding downstream 64588 49113013 ~ 49113261 (-)
G53008 LOC106573126 non-coding downstream 619947 48555819 ~ 48557902 (-)
G53651 NA non-coding upstream 76275 49279023 ~ 49279344 (-)
G53652 NA non-coding upstream 78912 49281660 ~ 49281864 (-)
G53655 NA non-coding upstream 80138 49282886 ~ 49283092 (-)
G53666 NA non-coding upstream 86451 49289199 ~ 49289470 (-)
G53677 NA non-coding upstream 97203 49299951 ~ 49300214 (-)
LOC110524264 LOC106573263 other downstream 873713 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 1616640 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 1799306 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 1888168 47288939 ~ 47289681 (-)
G55408 NA other upstream 1208886 50411634 ~ 50412128 (-)
G55627 NA other upstream 1562615 50765363 ~ 50767431 (-)
LOC110524514 borcs5 other upstream 1574999 50777716 ~ 50792069 (-)
G56372 NA other upstream 2197979 51400727 ~ 51412569 (-)
G56764 NA other upstream 2543869 51746617 ~ 51747220 (-)

Expression


Co-expression Network