G53785


Basic Information

Item Value
gene id G53785
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49384577 ~ 49384906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60013
gcccaaaccatgatgctgccaccgccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaagtttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60013 True 330 lncRNA 0.45 1 49384577 49384906

Neighbor

gene id symbol gene type direction distance location
LOC110524349 LOC106573123 coding upstream 569564 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 586073 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 678008 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 787969 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 793663 48552081 ~ 48590914 (+)
LOC110524405 LOC106573116 coding downstream 50856 49435762 ~ 49440232 (+)
kitlg scf coding downstream 281626 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 439004 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 462714 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 652617 50037523 ~ 50184257 (+)
G53678 NA non-coding upstream 83708 49300620 ~ 49300869 (+)
G53659 NA non-coding upstream 99034 49285279 ~ 49285543 (+)
G53654 NA non-coding upstream 101612 49282454 ~ 49282965 (+)
G53375 NA non-coding upstream 120498 49203295 ~ 49264079 (+)
G53382 cpa1 non-coding upstream 157693 49224538 ~ 49226884 (+)
G53790 NA non-coding downstream 8945 49393851 ~ 49394069 (+)
G53811 NA non-coding downstream 34682 49419588 ~ 49419789 (+)
G53817 NA non-coding downstream 39479 49424385 ~ 49424641 (+)
G53872 NA non-coding downstream 130704 49515610 ~ 49516080 (+)
G53899 NA non-coding downstream 169808 49554714 ~ 49585866 (+)
G53181 NA other upstream 490665 48893497 ~ 48893912 (+)
G52324 NA other upstream 1001320 48380542 ~ 48383257 (+)
G52080 NA other upstream 1359619 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2125679 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 2523113 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 2064916 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4281309 53632830 ~ 53705421 (+)
G59031 NA other downstream 4603234 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4659943 54044813 ~ 54089850 (+)

Expression


Co-expression Network