G53872


Basic Information

Item Value
gene id G53872
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49515610 ~ 49516080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60100
ctcatcatgaagtgctttgagagactagtcaaggatacaacatctccacttcactgatccttaacactggggccccacaaggatgcgtgctcagccccctcctgtactcaatgttcacccatggctgcatggccatgcacgcctctaactcaatcatcaagtttgcagacgacacaacagtagtgatcAAGCCAccaacaacaagacagcctatagggaggaggtgagggcacttggagtgtggtgtcaggaaaacaacctctcactcaacgtcaacaaaacaaaggag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60100 True 289 lncRNA 0.50 2 49515610 49516080

Neighbor

gene id symbol gene type direction distance location
LOC110524405 LOC106573116 coding upstream 75378 49435762 ~ 49440232 (+)
LOC110524349 LOC106573123 coding upstream 700597 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 717106 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 809041 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 919002 48591020 ~ 48596608 (+)
kitlg scf coding downstream 150452 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 307830 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 331540 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 521443 50037523 ~ 50184257 (+)
LOC110524434 LOC106573111 coding downstream 710276 50226356 ~ 50231065 (+)
G53817 NA non-coding upstream 90969 49424385 ~ 49424641 (+)
G53811 NA non-coding upstream 95821 49419588 ~ 49419789 (+)
G53790 NA non-coding upstream 121541 49393851 ~ 49394069 (+)
G53785 NA non-coding upstream 130704 49384577 ~ 49384906 (+)
G53678 NA non-coding upstream 214741 49300620 ~ 49300869 (+)
G53899 NA non-coding downstream 38634 49554714 ~ 49585866 (+)
G54041 NA non-coding downstream 277167 49793247 ~ 49796208 (+)
G54472 NA non-coding downstream 406291 49922371 ~ 49922630 (+)
G54476 NA non-coding downstream 408090 49924170 ~ 49924397 (+)
G54481 NA non-coding downstream 410839 49926919 ~ 49927144 (+)
G53181 NA other upstream 621698 48893497 ~ 48893912 (+)
G52324 NA other upstream 1132353 48380542 ~ 48383257 (+)
G52080 NA other upstream 1490652 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2256712 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 2654146 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 1933742 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4150135 53632830 ~ 53705421 (+)
G59031 NA other downstream 4472060 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4528769 54044813 ~ 54089850 (+)

Expression


Co-expression Network