G54472


Basic Information

Item Value
gene id G54472
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49922371 ~ 49922630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60725
ttactattttctgcattgtggaataataatgaagacatcacaactatgaaataacacatatagtaaccaaaaaagtgttaaacaaattagatccttcaaagtagccaccctttgccttgatgacagctttgcatactcttggcattctctcaaccagctttatgaggaatgcttttccaacagtcttgaaggagttaacacatatgttgagcacttgttggctgcttttccttcaccctgcagtccaacttatcccaaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60725 True 260 lncRNA 0.41 1 49922371 49922630

Neighbor

gene id symbol gene type direction distance location
LOC118964840 NA coding upstream 73392 49847620 ~ 49848979 (+)
LOC110524421 NA coding upstream 88368 49823910 ~ 49834003 (+)
kitlg scf coding upstream 219413 49666532 ~ 49702958 (+)
LOC110524405 LOC106573116 coding upstream 482139 49435762 ~ 49440232 (+)
LOC110524349 LOC106573123 coding upstream 1107358 48804907 ~ 48815013 (+)
LOC118964841 NA coding downstream 114893 50037523 ~ 50184257 (+)
LOC110524434 LOC106573111 coding downstream 303726 50226356 ~ 50231065 (+)
LOC110524453 LOC106573109 coding downstream 532926 50455556 ~ 50509791 (+)
LOC110524456 LOC106573106 coding downstream 608018 50530648 ~ 50592851 (+)
LOC110524482 LOC106573107 coding downstream 678005 50600635 ~ 50675495 (+)
G54041 NA non-coding upstream 126163 49793247 ~ 49796208 (+)
G53899 NA non-coding upstream 336505 49554714 ~ 49585866 (+)
G53872 NA non-coding upstream 406291 49515610 ~ 49516080 (+)
G53817 NA non-coding upstream 497730 49424385 ~ 49424641 (+)
G53811 NA non-coding upstream 502582 49419588 ~ 49419789 (+)
G54476 NA non-coding downstream 1540 49924170 ~ 49924397 (+)
G54481 NA non-coding downstream 4289 49926919 ~ 49927144 (+)
G54507 NA non-coding downstream 23977 49946607 ~ 49946846 (+)
G54532 NA non-coding downstream 43454 49966084 ~ 49966283 (+)
G54537 NA non-coding downstream 46202 49968832 ~ 49969034 (+)
G53181 NA other upstream 1028459 48893497 ~ 48893912 (+)
G52324 NA other upstream 1539114 48380542 ~ 48383257 (+)
G52080 NA other upstream 1897413 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2663473 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 3060907 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 1527192 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 3743585 53632830 ~ 53705421 (+)
G59031 NA other downstream 4065510 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4122219 54044813 ~ 54089850 (+)

Expression


Co-expression Network