G54536


Basic Information

Item Value
gene id G54536
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49967643 ~ 49968548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60789
cttaaagattttGGTATACCAGcgtaacccatccaacttgaaggagctggagcagttttgccttaaaGAAAGGGCAAAAATCACAGTggatagatgtgccaagcttatagaaaaaatgccaaggggggtgaatactttcgcaagccactgtatctgtACTATTCGTCCTtccatttcctttgttaatatggactcttttgacctaaattgcttttgttttatagatgagtattGAAATGCATGGCCTCCAAAGACActtttaaaagtgtcccatacaatatgctgtacctatgttatacCTGAAAAGGCAGTTGTAAATTATTCTGTCCTAGTTAAAAACAAGTTATCATGCAGTAGGTTTTGATAAAATGTCCAATATCCTCATCCATGTGGAAAGAGCAATTGTCAAGAGAATTTTGTTCAATGTTAACTTCAATTAAAATACTCTGTAactaagaatttgtaaggttcttattaaaatgaaacagacagaggccAGGCTACTTAGTCATCAGGTTTATTTACGAGAGCTCTGCCTGTCATTTCCTGTACATTGGTCTATATACCTCACATTATATCATAAATGTGCCTCCTCCTCTCAGAAACCATGACAATATAGTTTACAAGTCTTCTCCTACTCAtacattgtctgccacctgttacacaatctactacaagcccaaggtctctcccctccctaggtggggacagaatgtcctgtaaggaacacagtagtacagcttgtctgtcgatagctcctcttatcatttgtttcacacttgcaccctgcttacatactaaaaaggaacaaaaagtccttgttctaattctgaCTAGAACTACACACATCAGATTTAGCTTTATGATTCTAATACATTTCAATCATAcaatcatacagtgacaggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60789 True 906 lncRNA 0.38 1 49967643 49968548

Neighbor

gene id symbol gene type direction distance location
LOC110524413 LOC106573141 coding downstream 91151 49848378 ~ 49876492 (-)
LOC110532387 tmtc3 coding downstream 144671 49763995 ~ 49822972 (-)
cbpa1 cbpa1 coding downstream 739012 49224712 ~ 49228631 (-)
LOC110524388 LOC106573117 coding downstream 759126 49180132 ~ 49208517 (-)
LOC110524381 cav2 coding downstream 862908 49098552 ~ 49104735 (-)
LOC110524441 LOC106573156 coding upstream 291856 50260404 ~ 50270301 (-)
LOC110524445 LOC106573110 coding upstream 399018 50367566 ~ 50374531 (-)
LOC110524488 LOC106573155 coding upstream 750088 50718636 ~ 50752172 (-)
LOC110524514 borcs5 coding upstream 809168 50777716 ~ 50792069 (-)
LOC110532393 ckap5 coding upstream 840165 50808713 ~ 50850668 (-)
G54528 NA non-coding downstream 4802 49962642 ~ 49962841 (-)
G54513 NA non-coding downstream 17732 49949173 ~ 49949911 (-)
G54425 NA non-coding downstream 66222 49851044 ~ 49901421 (-)
G54411 NA non-coding downstream 126647 49827425 ~ 49840996 (-)
G54367 NA non-coding downstream 261432 49701222 ~ 49706211 (-)
G54572 NA non-coding upstream 18647 49987195 ~ 49987566 (-)
G54590 NA non-coding upstream 29637 49998185 ~ 49998403 (-)
G54612 NA non-coding upstream 40982 50009530 ~ 50009769 (-)
G54615 NA non-coding upstream 43961 50012509 ~ 50012738 (-)
G55395 NA non-coding upstream 418458 50387006 ~ 50387249 (-)
LOC110532382 LOC106573120 other downstream 981726 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 1663507 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 2406434 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 2589100 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 2677962 47288939 ~ 47289681 (-)
G55408 NA other upstream 443086 50411634 ~ 50412128 (-)
G55627 NA other upstream 796815 50765363 ~ 50767431 (-)
G56372 NA other upstream 1432179 51400727 ~ 51412569 (-)
G56764 NA other upstream 1778069 51746617 ~ 51747220 (-)

Expression


Co-expression Network