G54537


Basic Information

Item Value
gene id G54537
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49968832 ~ 49969034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60790
caccaccattgcttcactgtggggacgttgttctctgggtgatgagaggtgttgggtttgcgccagacatagcgttttccttgatggccaaaaagctcaatttttgtctcatctgatcagagtaccttcttccatatgtttggggagtctcccacatgccttttggcgaacatcaaacatgtttgcttatttctttctagaag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60790 True 203 lncRNA 0.45 1 49968832 49969034

Neighbor

gene id symbol gene type direction distance location
LOC118964840 NA coding upstream 119853 49847620 ~ 49848979 (+)
LOC110524421 NA coding upstream 134829 49823910 ~ 49834003 (+)
kitlg scf coding upstream 265874 49666532 ~ 49702958 (+)
LOC110524405 LOC106573116 coding upstream 528600 49435762 ~ 49440232 (+)
LOC110524349 LOC106573123 coding upstream 1153819 48804907 ~ 48815013 (+)
LOC118964841 NA coding downstream 68489 50037523 ~ 50184257 (+)
LOC110524434 LOC106573111 coding downstream 257322 50226356 ~ 50231065 (+)
LOC110524453 LOC106573109 coding downstream 486522 50455556 ~ 50509791 (+)
LOC110524456 LOC106573106 coding downstream 561614 50530648 ~ 50592851 (+)
LOC110524482 LOC106573107 coding downstream 631601 50600635 ~ 50675495 (+)
G54532 NA non-coding upstream 2549 49966084 ~ 49966283 (+)
G54507 NA non-coding upstream 21986 49946607 ~ 49946846 (+)
G54481 NA non-coding upstream 41688 49926919 ~ 49927144 (+)
G54476 NA non-coding upstream 44435 49924170 ~ 49924397 (+)
G54472 NA non-coding upstream 46202 49922371 ~ 49922630 (+)
G54571 NA non-coding downstream 18358 49987392 ~ 49987606 (+)
G54645 NA non-coding downstream 80060 50049094 ~ 50065311 (+)
G54651 NA non-coding downstream 90328 50059362 ~ 50091566 (+)
G54732 NA non-coding downstream 224327 50193361 ~ 50193729 (+)
G53181 NA other upstream 1074920 48893497 ~ 48893912 (+)
G52324 NA other upstream 1585575 48380542 ~ 48383257 (+)
G52080 NA other upstream 1943874 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2709934 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 3107368 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 1480788 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 3697181 53632830 ~ 53705421 (+)
G59031 NA other downstream 4019106 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4075815 54044813 ~ 54089850 (+)

Expression


Co-expression Network