G55115 (ckap5)


Basic Information

Item Value
gene id G55115
gene name ckap5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50810146 ~ 50817448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU61405
ACCCTGGAGTTGTTCTCCAGTCCTTGTCTCTGTCTCAGAATCTTCAGTCTCTCGTAGTACACTGCAGGTTTCATCTCCTctccgttcaaaggcactgagCCAGAATCTAGGCCATGTTGAGGAATCACTGTGCTAGAAGGCTGGATCCTGCCTTTGCCCTCTCTCTCAGACTCGATCACGCGGAGGCCTCTCTCCACGTAGCTCTGAAAGAACTGAGACGTGTTCCTCAGGAAGGGCTCCAGGTCAGCGTCGGAGTACTTCTGCTTATACTCATACAGCTCCGTCAGGCCctcttttgtgttttccttggaGCCAATCTTCTTGAATATCTCAGAGAGGATATCGCTCACTTTAGCTTTGGACATCCTGTCATC

Function

symbol description
ckap5 Predicted to enable microtubule binding activity and microtubule plus end polymerase. Predicted to be involved in microtubule cytoskeleton organization. Predicted to be located in chromosome, centromeric region and cytoplasm. Predicted to be active in centrosome; kinetochore; and spindle pole. Predicted to colocalize with microtubule plus-end. Orthologous to human CKAP5 (cytoskeleton associated protein 5).

NR:

description
Cytoskeleton-associated protein 5, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61405 True 374 lncRNA 0.51 3 50810146 50817448

Neighbor

gene id symbol gene type direction distance location
LOC110524496 LOC106573105 coding upstream 9766 50792196 ~ 50800380 (+)
LOC110524482 LOC106573107 coding upstream 135971 50600635 ~ 50675495 (+)
LOC110524456 LOC106573106 coding upstream 217295 50530648 ~ 50592851 (+)
LOC110524453 LOC106573109 coding upstream 300355 50455556 ~ 50509791 (+)
LOC110524434 LOC106573111 coding upstream 579081 50226356 ~ 50231065 (+)
c1h11orf49 cssa16h11orf49 coding downstream 39132 50856580 ~ 50871347 (+)
LOC118964313 NA coding downstream 174535 50991983 ~ 50993119 (+)
LOC110524544 LOC106573154 coding downstream 254248 51071696 ~ 51075445 (+)
LOC118964319 NA coding downstream 337059 51154507 ~ 51155396 (+)
acte1 LOC106561611 coding downstream 346629 51164077 ~ 51170344 (+)
G55101 NA non-coding upstream 30577 50777910 ~ 50779569 (+)
G55058 NA non-coding upstream 35753 50701597 ~ 50774393 (+)
G55070 LOC106573111 non-coding upstream 89923 50718682 ~ 50720223 (+)
G54987 NA non-coding upstream 132034 50677338 ~ 50678112 (+)
G55664 NA non-coding downstream 34833 50852281 ~ 50852604 (+)
G55690 NA non-coding downstream 73316 50890764 ~ 50891884 (+)
G55731 NA non-coding downstream 134285 50951733 ~ 50951962 (+)
G55908 LOC106561613 non-coding downstream 275284 51092732 ~ 51094575 (+)
G55963 NA non-coding downstream 358186 51175634 ~ 51194020 (+)
LOC118964841 NA other upstream 726150 50037523 ~ 50184257 (+)
G53181 NA other upstream 1916234 48893497 ~ 48893912 (+)
G52324 NA other upstream 2426889 48380542 ~ 48383257 (+)
G52080 NA other upstream 2785188 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3551248 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 632374 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 2848767 53632830 ~ 53705421 (+)
G59031 NA other downstream 3170692 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3227401 54044813 ~ 54089850 (+)
G59963 NA other downstream 3903740 54721188 ~ 54721463 (+)

Expression


Co-expression Network