G55963


Basic Information

Item Value
gene id G55963
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51175634 ~ 51194020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU62296
GTTACCCGGTCCAAGCTGCggagaatcacctttggcagtttCTGCTTTCCCTCCAAACgaaggtggagaagtagagggggACAAGTCGCGTACCTCCGGCTCCAATCACCCCAAGGATGGATCCCACCACTTGGTACTGCCAAGGTCATGGCATTTGATTTCAAGCTGCCCGTCAGTTTCTTGGCTGTCTGAAAACAACAAATAGAAAAGGTGAGCTTCTGGTCTGCTTCCTTTACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62296 True 238 lncRNA 0.53 2 51175634 51194020

Neighbor

gene id symbol gene type direction distance location
acte1 LOC106561611 coding upstream 5290 51164077 ~ 51170344 (+)
LOC118964319 NA coding upstream 20238 51154507 ~ 51155396 (+)
LOC110524544 LOC106573154 coding upstream 100189 51071696 ~ 51075445 (+)
LOC118964313 NA coding upstream 182515 50991983 ~ 50993119 (+)
c1h11orf49 cssa16h11orf49 coding upstream 304287 50856580 ~ 50871347 (+)
shank2b LOC106573098 coding downstream 20810 51214830 ~ 51342260 (+)
LOC110524569 LOC106573096 coding downstream 164268 51358288 ~ 51424303 (+)
LOC110524575 fgf3 coding downstream 255333 51449353 ~ 51451460 (+)
LOC110524584 LOC106573153 coding downstream 261111 51455131 ~ 51458797 (+)
trnap-ugg-2 NA coding downstream 436148 51630168 ~ 51630239 (+)
G55908 LOC106561613 non-coding upstream 81059 51092732 ~ 51094575 (+)
G55731 NA non-coding upstream 223672 50951733 ~ 50951962 (+)
G55690 NA non-coding upstream 283750 50890764 ~ 50891884 (+)
G55664 NA non-coding upstream 323030 50852281 ~ 50852604 (+)
G55115 ckap5 non-coding upstream 358186 50810146 ~ 50817448 (+)
G56152 NA non-coding downstream 45310 51239330 ~ 51239638 (+)
G56156 NA non-coding downstream 51938 51245958 ~ 51246251 (+)
G56162 NA non-coding downstream 61331 51255351 ~ 51255644 (+)
G56185 NA non-coding downstream 95089 51289109 ~ 51289512 (+)
LOC118964841 NA other upstream 1091638 50037523 ~ 50184257 (+)
G53181 NA other upstream 2281722 48893497 ~ 48893912 (+)
G52324 NA other upstream 2792377 48380542 ~ 48383257 (+)
G52080 NA other upstream 3150676 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3916736 47227246 ~ 47260224 (+)
LOC118936380 LOC106581842 other downstream 2472195 53632830 ~ 53705421 (+)
G59031 NA other downstream 2794120 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2850829 54044813 ~ 54089850 (+)
G59963 NA other downstream 3527168 54721188 ~ 54721463 (+)

Expression


Co-expression Network