G56507


Basic Information

Item Value
gene id G56507
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51549369 ~ 51565773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU62861
tgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagtttaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttgcaaataaattcataaaaaattctac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62861 True 314 lncRNA 0.50 3 51549369 51565773

Neighbor

gene id symbol gene type direction distance location
LOC110524584 LOC106573153 coding upstream 90572 51455131 ~ 51458797 (+)
LOC110524575 fgf3 coding upstream 97909 51449353 ~ 51451460 (+)
LOC110524569 LOC106573096 coding upstream 125066 51358288 ~ 51424303 (+)
shank2b LOC106573098 coding upstream 207736 51214830 ~ 51342260 (+)
acte1 LOC106561611 coding upstream 379025 51164077 ~ 51170344 (+)
trnap-ugg-2 NA coding downstream 64395 51630168 ~ 51630239 (+)
trnap-agg NA coding downstream 65059 51630832 ~ 51630903 (+)
LOC110524604 LOC106573091 coding downstream 236224 51801997 ~ 51852291 (+)
LOC110524623 LOC106573089 coding downstream 322627 51888400 ~ 51894917 (+)
LOC110524629 LOC106573088 coding downstream 334550 51900323 ~ 51917984 (+)
G56475 NA non-coding upstream 48926 51500205 ~ 51500443 (+)
G56455 NA non-coding upstream 75448 51473696 ~ 51473921 (+)
G56415 NA non-coding upstream 106198 51442964 ~ 51443171 (+)
G56185 NA non-coding upstream 259857 51289109 ~ 51289512 (+)
G56554 NA non-coding downstream 41841 51607614 ~ 51607991 (+)
G56541 NA non-coding downstream 107802 51673575 ~ 51674734 (+)
G56835 NA non-coding downstream 199008 51764781 ~ 51764994 (+)
G56860 NA non-coding downstream 220683 51786456 ~ 51786792 (+)
G56861 NA non-coding downstream 221063 51786836 ~ 51787037 (+)
LOC118964841 NA other upstream 1465373 50037523 ~ 50184257 (+)
G53181 NA other upstream 2655457 48893497 ~ 48893912 (+)
G52324 NA other upstream 3166112 48380542 ~ 48383257 (+)
G52080 NA other upstream 3524411 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 2100442 53632830 ~ 53705421 (+)
G59031 NA other downstream 2422367 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2479076 54044813 ~ 54089850 (+)
G59963 NA other downstream 3155415 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 4339735 55905508 ~ 55923376 (+)

Expression


Co-expression Network