G56860


Basic Information

Item Value
gene id G56860
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51786456 ~ 51786792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU63228
gagctcatacaactcgtttattttgactataacaaatactcagatgaaaaatattgtgctatttatcacagactactttgtgttaaagtttaacaaggactctctcctcctcaccagtgtcatgatgaaagatatgatcaagagcctcacatacagtgtatcgtttggtcattgtgctgccacagaatgaattgcgatcaaggcctcaaaaaagctttatataccagagctgtgagaaaagttctatatattattgaaacaatgttgcgattgtttgtgagaatgccaacaggtgtggttcccgtggggggaagattctattggggaaaggttcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63228 True 337 lncRNA 0.46 1 51786456 51786792

Neighbor

gene id symbol gene type direction distance location
trnap-agg NA coding upstream 155553 51630832 ~ 51630903 (+)
trnap-ugg-2 NA coding upstream 156217 51630168 ~ 51630239 (+)
LOC110524584 LOC106573153 coding upstream 327659 51455131 ~ 51458797 (+)
LOC110524575 fgf3 coding upstream 334996 51449353 ~ 51451460 (+)
LOC110524569 LOC106573096 coding upstream 362153 51358288 ~ 51424303 (+)
LOC110524604 LOC106573091 coding downstream 15205 51801997 ~ 51852291 (+)
LOC110524623 LOC106573089 coding downstream 101608 51888400 ~ 51894917 (+)
LOC110524629 LOC106573088 coding downstream 113531 51900323 ~ 51917984 (+)
LOC110524688 LOC106573082 coding downstream 733714 52520506 ~ 52524718 (+)
LOC110524698 LOC106573080 coding downstream 741986 52528778 ~ 52551209 (+)
G56835 NA non-coding upstream 21462 51764781 ~ 51764994 (+)
G56541 NA non-coding upstream 111722 51673575 ~ 51674734 (+)
G56554 NA non-coding upstream 178465 51607614 ~ 51607991 (+)
G56507 NA non-coding upstream 220683 51549369 ~ 51565773 (+)
G56487 NA non-coding upstream 230587 51518735 ~ 51555869 (+)
G56861 NA non-coding downstream 44 51786836 ~ 51787037 (+)
G56916 NA non-coding downstream 59138 51845930 ~ 51846185 (+)
G56917 NA non-coding downstream 59695 51846487 ~ 51846790 (+)
G56918 NA non-coding downstream 60096 51846888 ~ 51847117 (+)
LOC118964841 NA other upstream 1702460 50037523 ~ 50184257 (+)
G53181 NA other upstream 2892544 48893497 ~ 48893912 (+)
G52324 NA other upstream 3403199 48380542 ~ 48383257 (+)
G52080 NA other upstream 3761498 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 1879423 53632830 ~ 53705421 (+)
G59031 NA other downstream 2201348 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2258057 54044813 ~ 54089850 (+)
G59963 NA other downstream 2934396 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 4118716 55905508 ~ 55923376 (+)

Expression


Co-expression Network