G57337


Basic Information

Item Value
gene id G57337
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52202704 ~ 52208886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU63731
TAAACTTTTATTGTTCCTTTTATGTCCAGCCAATTGGAGAGTCCAGTTTCAGCCCTCTCAACATGTGCGATTCAGACTCAGTACAGTATGAATACAGCACTGAACATACAGCCAAACAATGCTGCTGTGTCAACAACGGTGATGTCATCAAAGCCCAACCCATCTTACAGTAATGCATGAGACCGAGCACAGGACTGACCAGTAGGGCCTACTGAACTTGAATGAGTGAGATTCCTTTAGTCAGTTTAGGTTTTTTTCTGTAAGACCTTAACCCCCATTAGgatgaaaaaaaaatccagacatTTTTCCCAAATTCTCAGGTGAATCCTCCAACTGGATTTCTTGGAAAATTTGGGAATATTGGGAATCCTCCATTTGGGATTTCTGGAAAcgctgggaattttgggaaagtttaGAAACATTTGCAACCCTGTCCTCCATAGACTTCCCCTTGAGATGACTGGCTTGCTAATGCACATGTTAGGCTTATCTATAGACTGTGCTGTATGCACACATAACACACAGTCTCTGACATAAAGGGATGTCACTCATAATGGAATTAATGTTTATTATTATTTGCCACAAAGGCATGTTGAGTTCATATGAAGCTGATAGGAAGTTGCCTGTATGTATGATGCGTTGACTCATTGCAATGTATGGATGGAGCTTCTTTACCATATAGGCCTATAATCACTTTCCAATGTCATGCATGTTAGGATGTAGTAATAGCAACTTTCCTTCCAAATATCAAAGTTCAAGGCATTCATGCATTTGGCAACTCTTTCAATGACTTGTCGCATGAGGGGAAACCAGGGAAAGCACTTTGGTAGGTGTCTTGTTGACATAGTCACAATGTATGCAGAGgcatagctctggaccagagctagtaaAAGCATGGCTAGTATCACACCGAACATGTATTCAgggagaaataaaaaaaaaaagaaatctgcATTTTTATACTTCTGGCGGGAAATAACAGTAATACATCTCTACTGTTTAACCAGTGGCGGGTCATAATGATGAACAACAACACCAATTGATAATGCATACTCTATATATCTCGGATGACATCATAACTCTCATGTTGTTAATAAAAAAAGACAAATGAATGTCGCAAACATAGTAGGACCAATGAATGAGCTTTGGAGGACTATGATACGGGTATTGAAAGTTTGTGTTATTTATCTTGAGTTGCACCAGTTTATGGACCATGACACACAATAGTAGTATAACTGTTATAGGAGCTAGGCAGGTTGTGTTACGTGTAATACAATTTAAATAGCCATTCAAGATTCAAACAGACATTGCACGCTTACTTACTGAGCGAGAGTCACTGCGTCACTGTTGATAGTGACACTCACACTTCAGACATTGATTAAAAAGGGGctgaaacataaaaaataaaacataaaaaaaaaacgaaataaatGAGACATTAAAAAGATGAAACCAAATGCAAAACATTCTTTACAAAGCACCAGCATGTAGTCTACCACTAAGGTCTGATACAGTCAAAACAAAGCCTTTTTGTGCTCAATGTACTCTTTCATGGGATATTCAAACCACATAAATAGAATCCTTAGAAGGGAAAACACCCATTCTATATTTCTATTTCTATGATTCCAAACTCAGTTTAGTTGATATGGTTCCTCCAAGTGTACATGCTTACAACACTGGACACATGTTATGGCAAGGCGATGGTCACGGGACAGTTAGGTGTCCTGACAAGCAAACCAAATACACTACTGTCACACATTGTTTATGTCATGTTATACAACCGGTGGGTctagtcctgaatgctgattggttaaaaaccGCATTTCAGCCGGTGTCTATTCaacaagttaccaccagctaagtctatgacgttaaaatgcctatttactctgttccacctgactgcgcaatccactgtttTATCAGCCCAGTCAGGCAACTAGGCGTATGTCGAGGGtgactacttcacaggagagctgtttgaacttttttatttatcaaaaTGCGTTCATTGTtcattctggaacatgtgaactttcatgtgccttaataacaaacttgtatgccttCTGTAAATACAGTGGCTTgccaaagtattcaccccctggcatttttcctgttttgttgccttacaatctgGAAATAAAATGGATTTTGCGGGGGTttttatcatttgatttacacaacactttgaagatacaaaatattttttattgtgaaacaaacaagaaataagacaaaaaaactgaaaacttgagcatgcataattattagcattagccaccttttgcagcaattacagctgcaagtctcttggggtatgtctctataagcttggcacatctagccactgggatttttgcccattcttcaaggcaaaactgctccagctccttcgagttggatgggttccactggtgtacagcaatctttaagtcataccacagattctcaattgaattgaggtctaggctttgacaaggccattccaagacttttaaatgtttccccttaaaccactcaagtgttgctttagcagtatgcttaggaccattgtcctgctggaaggtgaacgtCCGTCCCAGGCTCAAATCTCTGGGAGACTGAAACagttttccctcaagaatttccctgtatttagtgtaatccatcattccttcaattctgaccagtttcccagtccctgtcaatgaaaaacatccccatagcatgatgctgccaccaccatgcttcactgtgtggatggtgttcttgggttgatgagaggtgttgggtttgcgccagacatagcattttccttgatggccaaaaagctaaatgttttactcatctgaccagagtaccttcttccatacgtttggggagtctcccacatgccctttggcgaacaccaaatgtgtttgcttatttcattctttaagcaatgttttttttctggccactcttctgtaaagcacagttctgtggagtgtacggcttaaagtggtcatatggacagatactccaatctcagctgtggagctttgcagctccttcagggttacctTTGGTCTCTttattgcctctctgattaatgccctccttgcctggtctgtgtgttttggtgggtggccctctcttggcaggtttgttgtggtgtcatattctttaaaacattttaataatgCATTTAATGGTGATCTgtggaatgttcaaagtttctgatatttttttacaacTCAACCTTATCTGTAGTTCTCCACAACATTGTCcgtgacctgtttggagagctccttggtcttcatggtgccacttgcttagtggtgttgcagactctggggcctttcagaacaggtgtatatatactgagatcatgtggcggattatgtgacacttagattgcacacaggtggactttctttaactaattatgtgacttctgaaggtcattggttgcaccagatcttatttaggagcttcatggtaaaggggtgaatacatatgcatgcaccacttttccattttttattttatatcatttttttcatttcacttcaccaatttagaCTGTTTAATAAATACTAtgaaataaaaatccatttaaattacaagtTGTAATgcagcaaaataggaaaaacgccaagggggataaGTACTTTTGCAAGGCTCTAtgcgaataaaattgttaaattacgagcacAGTTGGTTAAAAAGACAGCAACCGTCCCGCtagtcatgattggctgagataatgagtgggctggacatgccaagagatgagtttggattggtctgccatatagcacgcttctgtctatttgagctggtcattATGTCTAGGTAATCCAATCTAACgctgcttttttattttatttatcgtGTAGTAACACTTAACAAAAGACTCTactatgcaagtatccatttcaatagaacgTCACTGCAGCAACTGTTTCAGGgcactcgtctgagtgtgccagagtgcagaataacggcggttgaatatgtcagtaaacgttggcaaaaaagcatACAAACAAAATGGAAACAACACAGGATGTCTTATTTAATGAACGGGGTTGCAATCTGCCATGAAGCATTCgtccatgtatatgggtaagagtctagctacagtttcagatattatacgtttataattttgtcagaaagttgttttcattgcaagctaaagcttgctgttagctagctagctgacattagATGGCAGGCTCGCTAGCTAATATTATGCTTATGATCTGTGTGTAGTAACTTTAATGTTATATCAGAATGCCATttcgcattgctagttatagcctaatgttagcaagctaactagctaacactGAACCTATTTGGATAACTTTAGCTAGCactctatggattgggattatggttcattgtttagccccacccattttaagagggtgtgaacaatgctgaatgggtgtagacaccctactccagtaggtaccaaaacattcaaaaggcaattttctcaaaagtgagtttataagtttatcaactttcaaagcagaattactttcccattgttcctcaaatgcagtgtatgaaataccattttgtagctctgagtctccacttttatccaatgtaaaaaaaaaaaaaacacaatttcaaattttgcggCACGAGACCGATTTAAGCCGGTCGGtcacaatttataaacttgatctccactataaaaagcatctagacattatctcacatttctttaagactaacatttagttttcaacagcggattTTTGTATAAACCTTGCGGTGTGTCCCTCAGGTATTTGCAACATTGTtacaatattcaaattcgatctccagctgtcccatagcaaTGAACGTGCCGGGAGTccggatgagacagacaggcaggcagcttttctcagccagtcgaaatcatgaatccgcatcctttttatggatatatacaaactGCAGGTCTGATATGTTTTCAAGCTAATTTCTCGTTCCCACAGTTCATCAATACATTCAACTTTTACATACACAGATATGCATGTGCTAAAAATGCTCGCATCACTCTGGCTGAGAAGTTTCTCTTGTTTTGTCAGGAAACTCTTTCTGATAACAATGGCTACATGCAAACACTTGTAAACGGGGTCCATTCGTTTTCGAGAGCGTTACGAGTTGGAAATAAGCATGTTTCTGTGAGATAAAAATCAACGTTTCTCTGAACAAAGAAGTTACAGCGTTAATAGTAAGCTATATGTACTGGCTATATGTACTTATTAAGATAGCAGAACCATATACAttgcatatattatattagtattaCATGAATTGCTCTTTTGTCTGATGATGTTCGATAAGAGAAATCGTAGGATGCCGGGGACCaagatttgatttgactgtatCTCTGTAAAGGGGATGGTGTAATTCATCttgaaaaaagaaaagaaaaagggGGAAGAAAAAGTCACTGAAATGCATATAAAACACAAAGACATTTTCAGAAACTCATACACTTATCCTTCACAACTATATTACCTGCTaagcttatatatatatatatacactatatatggaATGCTATGTTGTAACAATTGCCCATAATGCCATACATCAAATGAAACACACACTTTGAAGCTACTGTACCTTCATGAATGAACAAGAAAGGCCTGTAatcacaatattttttttaaacagttaccTGCCATCTTGGTGCAGTACCTATGCACTAACACCTCACCCAGTCAAGAGCCAGTCATGGCATTGTGAAAGATAAGTGTAACCGTTCACATATAAGGCATATTGAAAAAGTTGAAACACCCCCTTTAGACACTCCTCCTTCAACGATAATGTAGGTTTAAAATAAGAGAGATCCCAGATATCTTCTCTGTCCAAATTTTGTATTGTGTCTTTTTCCCCACAAACAGAGCCTTAATTCCTCGAAACGgggaatatgtttttttttggcCTGCAAGGTGAAACCAAAGGTTGTGGAAACCAAAGTTGTCATAGATAGGCGTCAACTTCACAGAGTCTCCTTCACTGGACTGGACAGTGAAGACAGAGAAAGATGGCGCTACATTCAGAGGCCCATCAGGCAGAGCAGAGCCACCAGAAGCAGGGAGGCCAAGCTGAGGGACTTGGCAGCCATGATG

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63731 True 6113 lncRNA 0.37 2 52202704 52208886

Neighbor

gene id symbol gene type direction distance location
LOC110524629 LOC106573088 coding upstream 284720 51900323 ~ 51917984 (+)
LOC110524623 LOC106573089 coding upstream 307787 51888400 ~ 51894917 (+)
LOC110524604 LOC106573091 coding upstream 350929 51801997 ~ 51852291 (+)
trnap-agg NA coding upstream 571801 51630832 ~ 51630903 (+)
trnap-ugg-2 NA coding upstream 572465 51630168 ~ 51630239 (+)
LOC110524688 LOC106573082 coding downstream 311620 52520506 ~ 52524718 (+)
LOC110524698 LOC106573080 coding downstream 319892 52528778 ~ 52551209 (+)
LOC110524804 NA coding downstream 489794 52698680 ~ 52702647 (+)
LOC110524813 LOC106573076 coding downstream 498664 52707550 ~ 52722838 (+)
LOC110524844 LOC106573071 coding downstream 673984 52882870 ~ 52889860 (+)
G57312 NA non-coding upstream 40865 52161552 ~ 52161839 (+)
G57262 NA non-coding upstream 89595 52112875 ~ 52113109 (+)
G56985 NA non-coding upstream 209392 51991109 ~ 51993312 (+)
G56876 NA non-coding upstream 282810 51867701 ~ 51919894 (+)
G57364 NA non-coding downstream 32928 52241814 ~ 52259706 (+)
G57416 LOC106573083 non-coding downstream 125045 52333931 ~ 52339600 (+)
G57675 NA non-coding downstream 242530 52451416 ~ 52451669 (+)
G57690 NA non-coding downstream 253303 52462189 ~ 52462598 (+)
G57695 NA non-coding downstream 256417 52465303 ~ 52465565 (+)
LOC110524575 fgf3 other upstream 751769 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 2118708 50037523 ~ 50184257 (+)
G53181 NA other upstream 3308792 48893497 ~ 48893912 (+)
G52324 NA other upstream 3819447 48380542 ~ 48383257 (+)
G52080 NA other upstream 4177746 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 1457329 53632830 ~ 53705421 (+)
G59031 NA other downstream 1779254 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 1835963 54044813 ~ 54089850 (+)
G59963 NA other downstream 2512302 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 3696622 55905508 ~ 55923376 (+)

Expression


Co-expression Network