G58080


Basic Information

Item Value
gene id G58080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52779287 ~ 52783498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU64570
CAGATATTTGCTCTCTGAGCTGGATTGAGTTACACCTACTGCTCTGGTGGACGCCAAAAACACAGCGACATCTTCGCAGTGTACACACGCACCCGTGCACGCACGAACACATGTAGGGAACACCCAGTCATTGATCTACAAGACCTTTTGCATGCCTAACAACCCCAGGAGAAATCAGTGGTCTACTGCAGTCAAACTGTGCACTGTGCCCAGCTTCGCACGCTGGCCACCGGGAGctcctctgtcagaaacagcttgaagcactctgcctcagagGAAAATGGCAAGGGGatttgcactccagactgggactcatcaaagcaaacagcagggccaggaggggtgaaatggctggcgtccttccagctaccacagaactccACTGTACTGCATCCACTGttggtctgcctccatcaccaccagcatcttcaaatgGACCTGGGACTTCGTCAAGTGGACAAGGGGGCCTCCGATTCAGAGTTCTAAATGGCTACAAGGTTGGGGGGCAGCTCCTCACGGTCACTGTCAGAATTGAATTTTGGACTTTCATACTCAGACTCATCGTCAGAATTTATAAAAATGTCCAGAATTTCCGCATTTAtgagttgtctccttttgaagacattgctaatgctacagcttagctcgctagctacatacataaacaacaacactgaatggctcagagtgggagtgagaggttaCATGATTGACTGCCGGCACACACCacttgtatcaataaatcacCATCAGAAAGTGTTTTGTgtggtaattatttatttatttactgttttatttacaTGTTTTCAAGTgctggtgacaaatcatgcattccgattcttgcatagattgtaatggttacatattatgtgtgtaaaatacttttttgagggttgtactgattatgatgagctaagctaattctagctatgtgtggagccatgtttgttgacatacaatgcattctgggtttcaagtaaacgtctgtcagaccaaagatgttataacaaaatgaggtgaggAAGGGTTCACTCATTTTTCGAGTAAACTTCCAAAAGTGAATGATGTGATGTGAACAATGGTACACGACACatccccttcaacatgcatactatagACCAAACTCATCTGGtctcctcttattatctttggttgatgCGAAAAAACAGACATGGCGGCGTGCACAAACTACATATCGTCAGATTACTTCCGATTTCTAGAAAGCGTTTTACTCAAATATTTGttgatcaatggtgagctcagctgtgatgtgattaattataaatagtatttgctattagctaattcatagtGTAGTTTTTGTCAGCTGAGAGTTTGACCTaaaaatatgaccgcttgtgttacgttaatctttcctcagttagcgctaggacaaaGGTTGTTTACATTTtccagtttggatgattgtgttatgctgtacctacttctgtgaatgtctgaacattgattccaaaaataaactggtcacattctgga

Function

NR:

description
piggyBac transposable element-derived protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64570 True 1497 lncRNA 0.37 2 52779287 52783498

Neighbor

gene id symbol gene type direction distance location
LOC110524843 LOC106573072 coding downstream 10123 52766482 ~ 52769164 (-)
LOC110524838 LOC106573075 coding downstream 25982 52744317 ~ 52753305 (-)
LOC118964326 NA coding downstream 96674 52681889 ~ 52682613 (-)
LOC110524780 LOC106573150 coding downstream 124799 52644949 ~ 52654488 (-)
LOC110524766 pmge coding downstream 142589 52624357 ~ 52636698 (-)
LOC110532414 LOC106573136 coding upstream 27351 52810849 ~ 52815285 (-)
LOC110521107 LOC106573149 coding upstream 32663 52816161 ~ 52818942 (-)
LOC110524896 LOC106573068 coding upstream 160362 52943860 ~ 52955716 (-)
LOC118964864 NA coding upstream 226470 53007483 ~ 53020119 (-)
LOC110524937 LOC106573065 coding upstream 264242 53047740 ~ 53059946 (-)
G58040 NA non-coding downstream 23845 52703837 ~ 52755442 (-)
G58059 NA non-coding downstream 40259 52734088 ~ 52739028 (-)
G58050 NA non-coding downstream 55166 52723762 ~ 52724121 (-)
G58010 NA non-coding downstream 56472 52721072 ~ 52722815 (-)
G58138 NA non-coding upstream 80866 52864364 ~ 52864565 (-)
G58141 NA non-coding upstream 81916 52865414 ~ 52865614 (-)
G58458 LOC106573071 non-coding upstream 104041 52887539 ~ 52889793 (-)
G58475 LOC106573070 non-coding upstream 129162 52912660 ~ 52915682 (-)
G58469 NA non-coding upstream 141334 52924832 ~ 52925473 (-)
G57742 NA other downstream 283053 52495898 ~ 52496234 (-)
G56764 NA other downstream 1032067 51746617 ~ 51747220 (-)
G56372 NA other downstream 1374944 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 1987218 50777716 ~ 50792069 (-)
G55627 NA other downstream 2011856 50765363 ~ 50767431 (-)
G58565 LOC106561659 other upstream 355960 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 551226 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 642466 53425964 ~ 53426316 (-)
G58842 NA other upstream 804924 53588422 ~ 53588770 (-)
LOC110525178 LOC106581842 other upstream 978457 53761612 ~ 53774544 (-)

Expression


Co-expression Network