G58278


Basic Information

Item Value
gene id G58278
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53204076 ~ 53206257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU64789
ACTTCttcacctgatcctagatcagcactcctgttCTAAGACGCTTTATAACGACACCCAGACGTGATAGTAGTACAGGATATAGTAAGGGGAGCTGGTTTAGGTCTGGAAACACGGGTCAAGTTAATAGTAGGGATTTAACGATTCAGGTCCGCGGACCCCGAACCGatccaaatgtagcatgcatCCGTCAGAAAATGTATTCAAAAGTTACGATACACAGATTCACAAATGTTTTGCTCCTATTTCTTTGTTTCTACCTTCCAAAAAATATCATTTTTTTGTACAACTGATGTGTTCTCTCGTTCATGGTCAAACTAAGAATGTAACTGTCTTGACAGTCATGCCCAACAACCTAGGGAATATCAGTAACCTAGTCAAACTGCGCACTGTGCCAGCTTCGCATGCAGACCAATGTCTGGTAGGTGGCCTGTTCCTGATCTTGCTCATCTGAGCAACACGTTCAGCATTCAAATGCTAAAATAGTTTGTGTGATATTAGGCAGCATTAGTTCACAAcctaaagtgccttcagaaagtattcacaccccattattaaaaataaaaagctggaatgtcttgagtcaagttACTCAttcccttttgttatggcaagcctaaataagttcagcatGAAACATTTGCTTAAGTCACATATGTTGCATGCATAATAAcataatagtatttaacatgatttttgaatgactacctataTACCCCACaggtacaattatctgtaaggtccttcagttgAGCAGGGGATTTCAGACActgattcaactacaaagacacgggaggtttttcaatgcctcgcaaaaaaaagagcacctattggtagatgggtaaagacaaaaaaaagagcacctattggtagatgggtaaagacaaaaaaaagcagacatttaatatccctttgagcatgatgaatTTATAATTACActatggatggtgtatcaaccagggaccttctgcacacatcaacaactgacacccacgaagcatcgttacccatcgctccacaaaagccgcggcccttgcagagcaaggggaactactacttcaaggtctcagagcaagtggcgtcactgattgaaacgctatttagcgcccacgctaactaagctagccgtttcacatccgttacaaatacaccctcagggatttcaccacgaggtcaatggggactttaaaacacttaaagtttaatggctgtgatggcaGAAAACAACTGAgggtggatcaacaacattgtagttactccacaatactaacctaaatgacagagtggctgcatcatgttatggctatGCTTGTGATCGGCAAGGACTCGTTTTTtaaagataaaaataaatggaaaagaGCTGAGCACAGGCAAAGCCCCAGAGGAAAAACCTGGTTcatcagtctgctttccaacagacactgggagacaaattcacctttcagcaggacaataatctaaaataCAACAgcaaatatactgtacacagtacaacatttaatgttcctgagtggccaagttacacaCAGCTGTAAACCCTGTCAAGGGTGATTCTAACACatattgactcagaggtgtgaatacttacataaattcgatttctgtatttcattaaattaaatttgcaaacatttctaaaaatatgtttttactttgtcattatgggatattgtgtgtagataggcaGGGAAAaatatctatttaatccattttgaattcacgCTGTAACACAATAttatatggaataagtcaaggggtatgaatactttctgaaggcactgtatgtaatttGCTAGGTTATTCATATCTATGAGCTGTTGAAAATTGTTTTACAGGAATAAAAGTAAGCTACCAGAAACAACTCTCATTTGGCTATACTTGCTGAACAGTGTTTACAATTGATTTTATTTTGATTGTTAAGATTCA
>TU64793
gaatgtcttgagtcaagttACTCAttcccttttgttatggcaagcctaaataagttcagcatGAAACATTTGCTTAAGTCACATATGTTGCATGCATAATAAcataatagtatttaacatgatttttgaatgactacctataTACCCCACaggtacaattatctgtaaggtccttcagttgAGCAGGGGATTTCAGACActgattcaactacaaagacacgggaggtttttcaatgcctcgcaaaaaaaagagcacctattggtagatgggtaaagacaaaaaaaaagagcacctattggtagatgggtaaagacaaaaaaaagagcacctattggtagatgggtaaagacaaaaaaaagagcacctattggtagatgggtaaagacaaaaaaaagagcacctattggtagatgggtaaagacaaaaaaaagcagacatttaatatccctttgagcatgatgaatTTATAATTACActatggatggtgtatcaaccagggaccttctgcacacatcaacaactgacacccacgaagcatcgttacccatcgctccacaaaagccgcggcccttgcagagcaaggggaactactacttcaaggtctcagagcaagtggcgtcactgattgaaacgctatttagcgcccacgctaactaagctagccgtttcacatccgttacaaatacaccctcagggatttcaccacgaggtcaatggggactttaaaacacttaaagtttaatggctgtgatggcaGAAAACAACT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64789 False 1926 lncRNA 0.42 2 53204076 53206257
TU64793 True 767 lncRNA 0.40 2 53204647 53205560

Neighbor

gene id symbol gene type direction distance location
LOC110524999 LOC106573060 coding upstream 22316 53159233 ~ 53181760 (+)
LOC110524948 LOC106573061 coding upstream 54387 53080973 ~ 53149689 (+)
LOC110524927 LOC106573064 coding upstream 131328 53059953 ~ 53072748 (+)
LOC110524916 LOC106573063 coding upstream 156391 53007984 ~ 53047685 (+)
LOC118964862 NA coding upstream 218827 52965815 ~ 52988549 (+)
LOC110525022 LOC106573057 coding downstream 44352 53250609 ~ 53296485 (+)
LOC110532423 LOC106561694 coding downstream 149494 53355751 ~ 53373462 (+)
LOC110525096 LOC106573053 coding downstream 192793 53399050 ~ 53422754 (+)
LOC110525151 LOC106561689 coding downstream 231277 53437534 ~ 53485553 (+)
LOC110525170 LOC106573051 coding downstream 285589 53491846 ~ 53557609 (+)
G58192 NA non-coding upstream 172123 53031123 ~ 53031953 (+)
G58230 NA non-coding upstream 206646 52997224 ~ 52997430 (+)
G58229 NA non-coding upstream 207234 52996626 ~ 52996842 (+)
G58205 NA non-coding upstream 260819 52942885 ~ 52943257 (+)
G58187 NA non-coding downstream 27278 53233535 ~ 53314985 (+)
G58181 NA non-coding downstream 128484 53334741 ~ 53337311 (+)
G58369 NA non-coding downstream 219283 53425540 ~ 53425822 (+)
G58371 NA non-coding downstream 220370 53426627 ~ 53426922 (+)
G58372 NA non-coding downstream 220707 53426964 ~ 53427210 (+)
LOC110524575 fgf3 other upstream 1753141 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3120080 50037523 ~ 50184257 (+)
G53181 NA other upstream 4310164 48893497 ~ 48893912 (+)
G52324 NA other upstream 4820819 48380542 ~ 48383257 (+)
G52080 NA other upstream 5179118 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 459958 53632830 ~ 53705421 (+)
G59031 NA other downstream 781883 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 838592 54044813 ~ 54089850 (+)
G59963 NA other downstream 1514931 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2699251 55905508 ~ 55923376 (+)

Expression


Co-expression Network