G58181


Basic Information

Item Value
gene id G58181
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53334741 ~ 53337311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU64684
AACTAACTACATTTGGAGTAGGCATATGAAAGCAGACTGGCACTCAGCGTAACTGCTAACACTGTCCATCTACTTGTGTAACATACAGGAAGAGTGAGACCCGCATACTGGTGCAGCAGATAGACATTGTGAAAAACACCATTCAGAGGGAGGAGGAAAATACCTCTGAATTGGAGCATAAGTTCAGGATCTTCTCCTTTGGAGAGTACAGGGCTGACATAAGGATGGGCACGGTTATTTGAATATCTGAACGGACATTAGTATTTGAATACCTGGGAGAGTATTCAGTGGTAcctgaagtatagttttAATTGTACCTAACGCTTCCCAAACAGCCCACCAGGCTAAGGAAAGCCACCCTGTGTGAAAAATTGAGAAACAGTGACATACACTCTGAATGATCATGACAGACCGCTCTTAATTTCAGTTCAGATCGAATTGCCATAAGGTTGGCGTCTGAAGACATTTACTGATTATAAATGAGCTTTTATGTTAGGTCTATATTTTAGCTAGCTTAAGCCAAAGAAGGATTTACAAAAATGCGCTACTCATAAATGTGTCATTGTCTGTTATTTCAGTTAGATCTATAATTAAATGTCCTGTATACCTTGATTATAAAATAGCTCAATTGTTTAATATTCTTGCCTCACCACAAAATATCATAAAGATGTTATTGAAAAGTGCAATATGCACAATTTTATTATCCTTGTGCCATGAGGGGCACAACAGCTtggttcatcatcatcatcatataaaaaaatacataacTGTTTTCACAACAAGATGTTTTTCATTAAAAAATGAGGACTAATCCAGTGAACAAGATTAGCGACCggatgaaaaaaaatataaactaaagaaagtagaagaagcctgcTGAAGCATTCAGCTTTCAAGCATCTTTCATTTCcccatcttcttcttcctcttctactCCTCTTATGAACAAG

Function

NR:

description
cilia- and flagella-associated protein 100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64684 True 950 lncRNA 0.40 2 53334741 53337311

Neighbor

gene id symbol gene type direction distance location
LOC110525022 LOC106573057 coding upstream 38256 53250609 ~ 53296485 (+)
LOC110525010 LOC106573059 coding upstream 101567 53187018 ~ 53233174 (+)
LOC110524999 LOC106573060 coding upstream 152981 53159233 ~ 53181760 (+)
LOC110524948 LOC106573061 coding upstream 185052 53080973 ~ 53149689 (+)
LOC110524927 LOC106573064 coding upstream 261993 53059953 ~ 53072748 (+)
LOC110532423 LOC106561694 coding downstream 18440 53355751 ~ 53373462 (+)
LOC110525096 LOC106573053 coding downstream 61739 53399050 ~ 53422754 (+)
LOC110525151 LOC106561689 coding downstream 100223 53437534 ~ 53485553 (+)
LOC110525170 LOC106573051 coding downstream 154535 53491846 ~ 53557609 (+)
LOC110516195 LOC106581842 coding downstream 260883 53598194 ~ 53620959 (+)
G58187 NA non-coding upstream 19756 53233535 ~ 53314985 (+)
G58278 NA non-coding upstream 128484 53204076 ~ 53206257 (+)
G58192 NA non-coding upstream 302788 53031123 ~ 53031953 (+)
G58230 NA non-coding upstream 337311 52997224 ~ 52997430 (+)
G58229 NA non-coding upstream 337899 52996626 ~ 52996842 (+)
G58369 NA non-coding downstream 88229 53425540 ~ 53425822 (+)
G58371 NA non-coding downstream 89316 53426627 ~ 53426922 (+)
G58372 NA non-coding downstream 89653 53426964 ~ 53427210 (+)
G58346 LOC106561689 non-coding downstream 100275 53437586 ~ 53558274 (+)
G58840 NA non-coding downstream 249651 53586962 ~ 53587198 (+)
LOC110524575 fgf3 other upstream 1883806 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3250745 50037523 ~ 50184257 (+)
G53181 NA other upstream 4440829 48893497 ~ 48893912 (+)
G52324 NA other upstream 4951484 48380542 ~ 48383257 (+)
G52080 NA other upstream 5309783 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 328904 53632830 ~ 53705421 (+)
G59031 NA other downstream 650829 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 707538 54044813 ~ 54089850 (+)
G59963 NA other downstream 1383877 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2568197 55905508 ~ 55923376 (+)

Expression


Co-expression Network