G58346 (LOC106561689)


Basic Information

Item Value
gene id G58346
gene name LOC106561689
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53437586 ~ 53558274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU64874
TGCACGTTGTTTTCTTGTATTTTAGGTCTTGGAAAGGAGAAACGAGAGTGGTCAGATCAATGTGTGAAGGGTTGGTCGACATGGTGGGAGAGTACAGATGATGAAACATTGAGAACGGAACTCTAGACCGATCATAGTTCCTAAAACGGACCGCGAGACGAACACGGTGATTATGCCCAGCGCAGCAGTGAGACGTTTATCACAAGTCGAAAAATACCTCAACAGCCGGAACGATATGGCGGAACGGAGCAGTGGCGAAGGGAACTCCCGGAACATTCCGGAGTCGATGCATCACGGCAGCTTGGAGAACAACCTCGATCTGGACCTGAGCGGCATCCCAGACTCCCAACGCTACCTCGACTCCTCCCACCGCAGCCTAGACTCCTCCTACCGCTCCCTGCCCCCCGGACTCAACAGCTTGCAGCAGAAGATCCTCAGGGTTAGTTGTTAATTGGTTATAAAGATATCCTGAGTGAATGAATAACGCACCAATTACATACTTATTTCATAAACAatgttatgcaacacccaatagGTGAAAAAGTAGTTGCCCCCCTTAcgctcaataactggttgtgccacctttagctgcaattaCTCCACCCAAACGTTTCCTGTAGTTGTTAGGCCATTCTACAAATGTCACTGAGTTAAAGCAGATCTGCATGGAAGTGTGGGACAAGATTCTTTCACAGTGaagtgagagactgatcaacaactacaggtaGTGTTTGGTTGTAGTCATTGTAGCTAAAAGTGGCACAACCAGTCATTGAGTGTAAGGGGTCAGTTattttttcacacaggggaactgggtgttgcataacttttgTAATTAAATCATTAAAATATGTTTGTTATTTGTAagctcaggttccctttatctaatattaggttttggttgaagatctgataataTTCAGTATAAAAAAATAGGCATAAGTAGAGAAAATCAGAGGGGCAAATACTTTCACGGCACTCTACATGTACATTTacttaaaaatataaaaatcatTCCACTCGTTCTATCTTTAGTGAGGATGAGGATGTTCAATCTTTGTGTCGAAGTTGTAAATACCTATTTGTTATGGTTTCCTCATTAAAGAGAGAAGAGTATGTGAGATAAGCTCAGCTCTTCTAAAGCACCTGTCAACCCTAGCCCGGTGTTTCAAGCCTATGTTTAACCACCACCTCACCCACATAGGAGTGTCCTAGCTATGTTTGTCCACAGTCACagtcactttaaaaaaaatgaatttaattTAGCCCAGGGCACTGTCAAACAGACTTGGGTTAAAAATCTCAAATCAGTTCAAATACCTCATccgtgcttgattgagcttgtttGTTGAATGCACCAATACAAAAGTCCCAAAATTGCAAACCACACCCATCTGGCACTTCAGGCAGGCTAGAGAAAACACTCAGAGTATTTGAAAGACGTCAAATAgtattcaaatagtatttgaacccaggtctgtcgcCGGTAAAGCCTGCATGACTGCACTGTCATACTATGACAGTGGAATCaacctcccccccaaaaaataaattcAGATGCCAGATTAATAAACAAGTCCACTCACATTCCAAGTAGGGTCACATCTGGAGGTGTCTCTGACACgtctttgatgtcttcaccagtTCCCCTTGAAATCTGAAATGGTTTGTGCAGTAACACATTAGTGTTAAATCACCTATTTGTAATGTATTGATCATGTTATCTACTTATTTGAACATACAGTAGCAGCTATTCAGTGGGTATTTAACTTTGAACTTGTGAATATTTACAAAACACCTGTACGCACTAATCATAATTGAGTTTTCCCTGTATCCTCTCTCTTTTATTACTCAAAATACTATTATTATTCAGTATTACTACTCTCgttaaaatgtatataaaaaggAACCTACAGGTGTTTTTATGAGAAGGACAAGCGGCTTTAGTGTCTTTGCTTGGTGTTTGCACATGTAGTTGAGACTGAGATGTCATTCAAATGAATTGTTCAGATTGTTCTAGTTCCAGGTACACAGCATGAGAATGTTGACAGTCAGCATTCCATAGTTTAATGCTCTTGTGGTCATACCAGAGATAGTACATTTACTTTCTACCATATCTGGTCATAACATGACAATAAGGATGAGTGTGGTGGTGGCAGAGTAGACTAAGTGGCAGCTAAACCAGTTTGATTGCAGAAACCATTCTTGAAATTGGATTGTTATGTCAATTATGTTCATTTTCTTTGCTAATTCAAAATATGTCTAGATTGAACTGTCACATTCAAATCCAAGGCAGCATTTTAATGGTTTTAACTTCTCTGATAACACCTGGGAAATTTTGTGACACAGTAAAAGTATAACTACTTCCGAATGTAAAAAAACGCATGCTACATACAGTCTAAGAGAAATGTTATAGTTCATTTATGTTTAATATGATGTTTCTGTTCTACTCTGTATTTGATGTAAATAGTCAGAAGTGGTATAGAGTAATGGGAGAGATATATTTCTCCATTTGTAATAGATTTGTAGAAAGTCGATCTATTTTGAAAGAGCAGTGTATATTTGATAGCCAAATTAAGCTATATGTAAAAGCCTATTCATGGTGAGTTTATATTGATAATTGTTTTCCATACTTATGTTTGGTTGAGTAATCACTGGATGCATATAGAGGTTTTTCTTCTTTCTTATTTGCCAGTATAAGTATGCTATCGCTAAAAATAAACAACCCACCAAAAGCAATACTGATCCTGCATTTCCTTGAGTTGTATATTTGCCCATGTTACAGATACAAATGTATCTTCATTTTTGTTGTGGGAGATCTAATAGTAGACAACAGTTAGTTCTCATTCAAGGTCCTACATCTTGACAGGCAAGGTAGAACTTAGTGACTCACCTCTTCCGAAAAATTATAATGCTGCTCAACTTACTAAACTTCAGTCCCTAATTCCTATATGACTGCAATAGTGCATATGAATGTTGCTTTATCCTGAACACAATTGTTTAAGCTTATTTTACCTATGCTTCATAGCAAATGCTATTGTATGTATATGAGTTATGAGCCTCTATTTCAGAGTTCTCAGTTTGCTGCTTTGCAATTGTTTCCCTTTGACTTTGTTGTTTTGAATATACAGTAGTTGTGGTCATTTTGATACCTGGAGGTATATTTTGTACCGTAAATGATTAGAAAAGTAAATTATAATCCATATGTGTCAGTGCCAATGATACGTATTAACACAtagagtgcattcagaaagtattcagaccccttgactttttctacaatgtattattctaaagtggattttttttaaatcacgcAAAAAAACTCTatacaccataccccataatgacaaagcaaaaacaggttttatataaatgtttgcaaatgtataaataaaaaaaac

Function

NR:

description
transmembrane and coiled-coil domains protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64874 True 3404 lncRNA 0.40 3 53437586 53558274

Neighbor

gene id symbol gene type direction distance location
LOC110525096 LOC106573053 coding upstream 14832 53399050 ~ 53422754 (+)
LOC110532423 LOC106561694 coding upstream 64124 53355751 ~ 53373462 (+)
LOC110525022 LOC106573057 coding upstream 141101 53250609 ~ 53296485 (+)
LOC110525010 LOC106573059 coding upstream 204412 53187018 ~ 53233174 (+)
LOC110524999 LOC106573060 coding upstream 255826 53159233 ~ 53181760 (+)
LOC110516195 LOC106581842 coding downstream 39920 53598194 ~ 53620959 (+)
LOC118936380 LOC106581842 coding downstream 74556 53632830 ~ 53705421 (+)
LOC118964886 NA coding downstream 127127 53685401 ~ 53686098 (+)
LOC110525273 LOC106561706 coding downstream 328646 53886920 ~ 53903845 (+)
LOC110525287 LOC106573038 coding downstream 355654 53913928 ~ 53938476 (+)
G58372 NA non-coding upstream 10376 53426964 ~ 53427210 (+)
G58371 NA non-coding upstream 10664 53426627 ~ 53426922 (+)
G58369 NA non-coding upstream 11764 53425540 ~ 53425822 (+)
G58181 NA non-coding upstream 100275 53334741 ~ 53337311 (+)
G58187 NA non-coding upstream 122601 53233535 ~ 53314985 (+)
G58840 NA non-coding downstream 28688 53586962 ~ 53587198 (+)
G58843 NA non-coding downstream 31639 53589913 ~ 53590161 (+)
G58845 NA non-coding downstream 32607 53590881 ~ 53591113 (+)
G58849 NA non-coding downstream 38759 53597033 ~ 53597391 (+)
G58855 NA non-coding downstream 39927 53598201 ~ 53634505 (+)
LOC110524575 fgf3 other upstream 1986651 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3353590 50037523 ~ 50184257 (+)
G53181 NA other upstream 4543674 48893497 ~ 48893912 (+)
G52324 NA other upstream 5054329 48380542 ~ 48383257 (+)
G52080 NA other upstream 5412628 48006674 ~ 48024958 (+)
G59031 NA other downstream 429866 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 486575 54044813 ~ 54089850 (+)
G59963 NA other downstream 1162914 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2347234 55905508 ~ 55923376 (+)

Expression


Co-expression Network