G58751


Basic Information

Item Value
gene id G58751
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53465915 ~ 53561453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU65320
ctgtttttgctttgtcattatggggtatggtgtatAGAGTTTTTTTgcgtgatttaaaaaaaatccactttagaataatacattgtagaaaaagtcaaggggtctgaatactttctgaatgcactctaTGTGTTAATACGTATCATTGGCACTGACACATATGGATTATAATTTACTTTTCTAATCATTTACGGTACAAAATATACCTCCAGGTATCAAAATGACCACAACTACTGTATATTCAAAACAACAAAGTCAAAGGGAAACAATTGCAAAGCAGCAAACTGAGAACTCTGAAATAGAGGCTCATAACTCATATACATACAATAGCATTTGCTATGAAGCATAGGTAAAATAAGCTTAAACAATTGTGTTCAGGATAAAGCAACATTCATATGCACTATTGCAGTCATATAGGAATTAGGGACTGAAGTTTAGTAAGTTGAGCAGCATTATAATTTTTCGGAAGAGGTGAGTCACTAAGTTCTACCTTGCCTGTCAAGATGTAGGACCTTGAATGAGAACTAACTGTTGTCTACTATTAGATCTCCCACAACAAAAATGAAGATACATTTGTATCTGTAACATGGGCAAATATACAACTCAAGGAAATGCAGGATCAGTATTGCTTTTGGTGGGTTGTTTATTTTTAGCGATAGCATACTTATACTGGCAAATAAGAAAGAAGAAAAACCTCTATATGCATCCAGTGATTACTCAACCAAACATAAGTATGGAAAACAATTATCAATATAAACTCACCATGAATAGGCTTTTACATATAGCTTAATTTGGCTATCAAATATACACTGCTCTTTCAAAATAGATCGACTTTCTACAAATCTATTACAAATGGAGAAATATATCTCTCCCATTACTCTATACCACTTCTGACTATTTACATCAAATACAGAGTAGAACAGAAACATCATATTAAACATAAATGAACTATAACATTTCTCTTAGACTGTATGTAGCATGCGTTTTTTTACATTCGGAAGTAGTTATACTTTTACTGTGTCACAAAATTTCCCAGGTGTTATCAGAGAAGTTAAAACCATTAAAATGCTGCCTTGGATTTGAATGTGACAGTTCAATCTAGACATATTTTGAATTAGCAAAGAAAATGAACATAATTGACATAACAATCCAATTTCAAGAATGGTTTCTGCAATCAAACTGGTTTAGCTGCCACTTAGTCTACTCTGCCACCACCACACTCATCCTTATTGTCATGTTATGACCAGATATGGTAGAAAGTAAATGTACTATCTCTGGTATGACCACAAGAGCATTAAACTATGGAATGCTGACTGTCAACATTCTCATGCTGTGTACCTGGAACTAGAACAATCTGAACAATTCATTTGAATGACATCTCAGTCTCAACTACATGTGCAAACACCAAGCAAAGACACTAAAGCCGCTTGTCCTTCTCATAAAAACACCTGTAGGTTcctttttatatacattttaacGAGAGTAGTAATACTGAATAATAATAGTATTTTGAGTAATAAAAGAGAGAGGATACAGGGAAAACTCAATTATGATTAGTGCGTACAGGTGTTTTGTAAATATTCACAAGTTCAAAGTTAAATACCCACTGAATAGCTGCTACTGTATGTTCAAATAAGTAGATAACATGATCAATACATTACAAATAGGTGATTTAACACTAATGTGTTACTGCACAAACCATTTCAGATTTCAAGGGGAactggtgaagacatcaaagacGTGTCAGAGACACCTCCAGATGTGACCCTACTTGGAATGTGAGTGGACTTGTTTATTAATCTGGCATCTgaatttattttttgggggggaggttGATTCCACTGTCATAGTATGACAGTGCAGTCATGCAGGCTTTACCGgcgacagacctgggttcaaatactatttgaatacTATTTGACGTCTTTCAAATACTCTGAGTGTTTTCTCTAGCCTGCCTGAAGTGCCAGATGGGTGTGGTTTGCAATTTTGGGACTTTTGTATTGGTGCATTCAACaaacaagctcaatcaagcacggATGAGGTATTTGAACTGATTTGAGATTTTTAACCCAAGTCTGTTTGACAGTGCCCTGGGCTAaattaaattcattttttttaaagtgactGTGACTGTGGACAAACATAGCTAGGACACTCCTATGTGGGTGAGGTGGTGGTTAAACATAGGCTTGAAACACCGGGCTAGGGTTGACAGGTGCTTTAGAAGAGCTGAGCTTATCTCACATACTCTTCTCTCTTTAATGAGGAAACCATAACAAATAGGTATTTACAACTTCGACACAAAGATTGAACATCCTCATCCTCACTAAAGATAGAACGAGTGGAatgatttttatatttttaagtAAATGTACATGTAGAGTGCCGTGAAAGTATTTGCCCCTCTGATTTTCTCTACTTATGCCTATTTTTTTATACTGAAtattatcagatcttcaaccaaaacctaatattagataaagggaacctgagctTACAAATAACAAACATATTTTAATGATTTAATTAcaaaagttatgcaacacccagttcccctgtgtgaaaaaatAACTGACCCCTTACACTCAATGACTGGTTGTGCCACTTTTAGCTACAATGACTACAACCAAACACtacctgtagttgttgatcagtctctcacttCACTGTGAAAGAATCTTGTCCCACACTTCCATGCAGATCTGCTTTAACTCAGTGACATTTGTAGAATGGCCTAACAACTACAGGAAACGTTTGGGTGGAGtaattgcagctaaaggtggcacaaccagttattgagcgTAAGGGGGGCAACTACTTTTTCACctattgggtgttgcataacatTGTTTATGAAATAAGTATGTAATTGGTGCGTTATTCATTCACTCAGGATATCTTTATAACCAATTAACAACTAACCCTGAGGATCTTCTGCTGCAAGCTGTTGAGTCCGGGGGGCAGGGAGCGGTAGGAGGAGTCTAGGCTGCGGTGGGAGGAGTCGAGGTAGCGTTGGGAGTCTGGGATGCCGCTCAGGTCCAGATCGAGGTTGTTCTCCAAGCTGCCGTGATGCATCGACTCCGGAATGTTCCGGGAGTTCCCTTCGCCACTGCTCCGTTCC
>TU65321
GTATATCATTTTTTAATGTTGTAGGAGTGTGAGAGAAGTCATAAGTCAACTAATACTGTGGTGTGTATTATTGTCTGTCCCAGAAATAAAAAGATTGAATGAGCTCCAGTGCAATCATGTCCGTGCCTGATGATGGGTTacgtaagcacaggcaaaatcctagaggaaaaaaaACCTCTATGCATCCAGTGATTACTCAACCAAACATAAGTATGGAAAACAATTATCAATATAAACTCACCATGAATAGGCTTTTACATATAGCTTAATTTGGCTATCAAATATACACTGCTCTTTCAAAATAGATCGACTTTCTACAAATCTATTACAAATGGAGAAATATATCTCTCCCATTACTCTATACCACTTCTGACTATTTACATCAAATACAGAGTAGAACAGAAACATCATATTAAACATAAATGAACTATAACATTTCTCTTAGACTGTATGTAGCATGCGTTTTTTTACATTCGGAAGTAGTTATACTTTTACTGTGTCACAAAATTTCCCAGGTGTTATCAGAGAAGTTAAAACCATTAAAATGCTGCCTTGGATTTGAATGTGACAGTTCAATCTAGACATATTTTGAATTAGCAAAGAAAATGAACATAATTGACATAACAATCCAATTTCAAGAATGGTTTCTGCAATCAAACTGGTTTAGCTGCCACTTAGTCTACTCTGCCACCACCACACTCATCCTTATTGTCATGTTATGACCAGATATGGTAGAAAGTAAATGTACTATCTCTGGTATGACCACAAGAGCATTAAACTATGGAATGCTGACTGTCAACATTCTCATGCTGTGTACCTGGAACTAGAACAATCTGAACAATTCATTTGAATGACATCTCAGTCTCAACTACATGTGCAAACACCAAGCAAAGACACTAAAGCCGCTTGTCCTTCTCATAAAAACACCTGTAGGTTcctttttatatacattttaacGAGAGTAGTAATACTGAATAATAATAGTATTTTGAGTAATAAAAGAGAGAGGATACAGGGAAAACTCAATTATGATTAGTGCGTACAGGTGTTTTGTAAATATTCACAAGTTCAAAGTTAAATACCCACTGAATAGCTGCTACTGTATGTTCAAATAAGTAGATAACATGATCAATACATTACAAATAGGTGATTTAACACTAATGTGTTACTGCACAAACCATTTCAGATTTCAAGGGGAactggtgaagacatcaaagacGTGTCAGAGACACCTCCAGATGTGACCCTACTTGGAATGTGAGTGGACTTGTTTATTAATCTGGCATCTgaatttattttttgggggggaggttGATTCCACTGTCATAGTATGACAGTGCAGTCATGCAGGCTTTACCGgcgacagacctgggttcaaatactatttgaatacTATTTGACGTCTTTCAAATACTCTGAGTGTTTTCTCTAGCCTGCCTGAAGTGCCAGATGGGTGTGGTTTGCAATTTTGGGACTTTTGTATTGGTGCATTCAACaaacaagctcaatcaagcacggATGAGGTATTTGAACTGATTTGAGATTTTTAACCCAAGTCTGTTTGACAGTGCCCTGGGCTAaattaaattcattttttttaaagtgactGTGACTGTGGACAAACATAGCTAGGACACTCCTATGTGGGTGAGGTGGTGGTTAAACATAGGCTTGAAACACCGGGCTAGGGTTGACAGGTGCTTTAGAAGAGCTGAGCTTATCTCACATACTCTTCTCTCTTTAATGAGGAAACCATAACAAATAGGTATTTACAACTTCGACACAAAGATTGAACATCCTCATCCTCACTAAAGATAGAACGAGTGGAatgatttttatatttttaagtAAATGTACATGTAGAGTGCCGTGAAAGTATTTGCCCCTCTGATTTTCTCTACTTATGCCTATTTTTTTATACTGAAtattatcagatcttcaaccaaaacctaatattagataaagggaacctgagctTACAAATAACAAACATATTTTAATGATTTAATTAcaaaagttatgcaacacccagttcccctgtgtgaaaaaatAACTGACCCCTTACACTCAATGACTGGTTGTGCCACTTTTAGCTACAATGACTACAACCAAACACtacctgtagttgttgatcagtctctcacttCACTGTGAAAGAATCTTGTCCCACACTTCCATGCAGATCTGCTTTAACTCAGTGACATTTGTAGAATGGCCTAACAACTACAGGAAACGTTTGGGTGGAGtaattgcagctaaaggtggcacaaccagttattgagcgTAAGGGGGGCAACTACTTTTTCACctattgggtgttgcataacatTGTTTATGAAATAAGTATGTAATTGGTGCGTTATTCATTCACTCAGGATATCTTTATAACCAATTAACAACTAACCCTGAGGATCTTCTGCTGCAAGCTGTTGAGTCCGGGGGGCAGGGAGCGGTAGGAGGAGTCTAGGCTGCGGTGGGAGGAGTCGAGGTAGCGTTGGGAGTCTGGGATGCCGCTCAGGTCCAGATCGAGGTTGTTCTCCAAGCTGCCGTGATGCATCGACTCCGGAATGTTCCGGGAGTTCCCTTCGCCACTGCTCCGTTCC

Function

NR:

description
transmembrane and coiled-coil domains protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65320 False 3124 lncRNA 0.48 2 53465915 53558234
TU65321 True 2603 lncRNA 0.38 3 53465915 53561453

Neighbor

gene id symbol gene type direction distance location
LOC110525089 LOC106573055 coding downstream 81439 53373701 ~ 53384476 (-)
LOC110525078 LOC105021811 coding downstream 127431 53334724 ~ 53338484 (-)
LOC110525034 elk3 coding downstream 155790 53298363 ~ 53310125 (-)
ucmab LOC106573148 coding downstream 215012 53238335 ~ 53250903 (-)
LOC110524998 NA coding downstream 381192 53077658 ~ 53084723 (-)
LOC110525255 LOC106573039 coding upstream 152260 53713713 ~ 53758738 (-)
LOC110525178 LOC106581842 coding upstream 200159 53761612 ~ 53774544 (-)
LOC118964330 NA coding upstream 217088 53778541 ~ 53780182 (-)
LOC118964334 NA coding upstream 239576 53801029 ~ 53802670 (-)
LOC118964895 LOC106581842 coding upstream 252532 53813985 ~ 53822325 (-)
G58730 NA non-coding downstream 29898 53435761 ~ 53436017 (-)
G58724 NA non-coding downstream 35527 53430105 ~ 53430388 (-)
G58723 NA non-coding downstream 35868 53429736 ~ 53430047 (-)
G58720 NA non-coding downstream 38380 53427215 ~ 53427535 (-)
G58719 NA non-coding downstream 39058 53426624 ~ 53426857 (-)
G58819 NA non-coding upstream 1500 53562953 ~ 53563210 (-)
G58846 NA non-coding upstream 29481 53590934 ~ 53591463 (-)
G58850 NA non-coding upstream 35670 53597123 ~ 53597796 (-)
G58926 NA non-coding upstream 71201 53632654 ~ 53634966 (-)
G58954 NA non-coding upstream 198239 53759692 ~ 53760058 (-)
G58718 LOC100194703 other downstream 39599 53425964 ~ 53426316 (-)
G58565 LOC106561659 other downstream 325611 53139458 ~ 53140304 (-)
G57742 NA other downstream 969681 52495898 ~ 52496234 (-)
G56764 NA other downstream 1718695 51746617 ~ 51747220 (-)
G58842 NA other upstream 26969 53588422 ~ 53588770 (-)
G58958 LOC106581842 other upstream 230377 53791830 ~ 53797014 (-)
G59978 NA other upstream 1167678 54729131 ~ 54737244 (-)
G60516 NA other upstream 1508939 55070392 ~ 55070899 (-)

Expression


Co-expression Network