G58843


Basic Information

Item Value
gene id G58843
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53589913 ~ 53590161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU65416
gatagcagatgttctgaaagagctgcaaaatctggacccgtacaaatcagctgggcttgacaatctggaccctctatttctgaaactatccgccaccattgtcgcaacccctattaccagcctgttcaacctctctttcatatcgtctgagatccccaaggattggaaagctgccgcagtcatccccctcttcaaagggggagacaccctggacccaaactgttacagacctatatccatcctgccctg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65416 True 249 lncRNA 0.50 1 53589913 53590161

Neighbor

gene id symbol gene type direction distance location
LOC110525170 LOC106573051 coding upstream 32304 53491846 ~ 53557609 (+)
LOC110525151 LOC106561689 coding upstream 104360 53437534 ~ 53485553 (+)
LOC110525096 LOC106573053 coding upstream 167159 53399050 ~ 53422754 (+)
LOC110532423 LOC106561694 coding upstream 216451 53355751 ~ 53373462 (+)
LOC110525022 LOC106573057 coding upstream 293428 53250609 ~ 53296485 (+)
LOC110516195 LOC106581842 coding downstream 8033 53598194 ~ 53620959 (+)
LOC118936380 LOC106581842 coding downstream 42669 53632830 ~ 53705421 (+)
LOC118964886 NA coding downstream 95240 53685401 ~ 53686098 (+)
LOC110525273 LOC106561706 coding downstream 296759 53886920 ~ 53903845 (+)
LOC110525287 LOC106573038 coding downstream 323767 53913928 ~ 53938476 (+)
G58840 NA non-coding upstream 2715 53586962 ~ 53587198 (+)
G58346 LOC106561689 non-coding upstream 31639 53437586 ~ 53558274 (+)
G58372 NA non-coding upstream 162703 53426964 ~ 53427210 (+)
G58371 NA non-coding upstream 162991 53426627 ~ 53426922 (+)
G58369 NA non-coding upstream 164091 53425540 ~ 53425822 (+)
G58845 NA non-coding downstream 720 53590881 ~ 53591113 (+)
G58849 NA non-coding downstream 6872 53597033 ~ 53597391 (+)
G58855 NA non-coding downstream 8040 53598201 ~ 53634505 (+)
G58872 NA non-coding downstream 67641 53657802 ~ 53692144 (+)
LOC110524575 fgf3 other upstream 2138978 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3505917 50037523 ~ 50184257 (+)
G53181 NA other upstream 4696001 48893497 ~ 48893912 (+)
G52324 NA other upstream 5206656 48380542 ~ 48383257 (+)
G52080 NA other upstream 5564955 48006674 ~ 48024958 (+)
G59031 NA other downstream 397979 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 454688 54044813 ~ 54089850 (+)
G59963 NA other downstream 1131027 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2315347 55905508 ~ 55923376 (+)

Expression


Co-expression Network