G58993


Basic Information

Item Value
gene id G58993
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53967073 ~ 53969548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU65584
GCAAACATGCTCACCGAAGCCAGGGTAGTCCCAACATCAGCAACCCTCAAGAGGCTCCGAAGCTGAGGAAGTGCGCATGCAAGAAGTTGCAGAAACAAGTTGTTGGGAAAACTTCATAACAAAGTGAGGGGAAGCCCAAAACATGGTGCGCAAATCTCAGTTTAATGAGATATGTCTCTTTCGAGGGTGGTAACCAAATGATTGAAAGCATTACACCCTTGCCTGAGCCTTCGTTCAATCCAAGTAGATGTGCAATGCGTGTACTGGACAACAACAGGAACGCCCTTATAGGCTCCAAGGTGCGACAAAAATAAATTGTCGACCTGGACCAAAGGATggggttaggtatagggttagCCTGAAAAACCCTGGGGCAGAATGCGGGTGTGAACAGTGGCTGGTAGAGCACTGTCCACACACTCACTTTAGGGATGCCAAAAGCAAAAGATGGAGGAATATTGCTTCTCAGCGGCTAGTAGCTGCTGTGAAAGAATCTTAAGCACAATAGACATGTCCCAGGTTGAGTAACCTCATCCCTAGGCTATTGCGCACGGTGCAATATAAGCCTTGGATATCAACGATTCAAAGTTGGCCTTAGTGGGAGTGACGATATAATTTTATGGGAGTGACCTACTGAGTAATGTATTTGTCATCATTAAATTTTGGAGAATCACATGACTGCAAAGAGTGGGGAGGGTTAAGGGGAAGGTGTTGTGGGTGACGATTGGTTGGTAGATTAAGCCAATGCCTATGCAatgggagtttctcccgttctttcTGTATTGGCTAACGAAGGCCAACAAGTTTGACGCGTTGGTCCACCAGACCTTCTCTCTGTCCAAAAAAGTCCTGCAAGGAGCATAAGACCATGGAACACAGTGTAGGACGAAACGATCTGTTTAGTCATACCACTTCTGTAAAACAGAGAGAATGCATAAGGAGGTTGGCCCTCTTTTTCAAGAGTTGAAGACCTGCATTTCTTTccttaaaatgtaaaaaataaatgtaaaaaataatctcACCAGCTATGCCCCGAGAGAGTAGAGAATTGCTTTGTTTGCTAGGGTATAAACCCTGCATAAACCCTGCCAGGACTGGTTGTGAGTAGGGTATAACTGCTGCCTGAAAGTCACTGGCCATCGAGGGGCTCGAAAATGAGGGGGAGGCCCTATTCCCTTGCTCTGTGTAGACGGAAAAGGGAGGGTAGGTAACATAGTTGAAAAAGCATACGGCATCCCTCTATTTCATTGGTTTGTCAGCTCTCCCGCCCCAAATGGCGTGGTCACCGTTTTTGGGATGGGGTCTCCCATGGCCCTCACACGGTCTTTGCTTCTATCAGGGTGCAGAAAGTCAGTCTGGATAGATGTGGGAAGTGGGCTCTCTCTAGACAGAGCAGGCAATGTATCTGAAGGAAGAAGTATTCAAAATCCTGTattcataaaaaaaaatcctgtatTCACTGAGAAGTAGAAAAGCAATTGACACAAAGCAAAAACCTTTCGTTCAGTACTCAACCTCTCAACAGGGTCTGAAGAGCTACGCTCAGCAAAAATATCCTACACGGTTCGCTTCAGCGCAAATAAGCAGGAAACAGGGTCATGCTGAGATCTAGAGAGCAATAGTCCTCAAGGGGAAGATGAACGAGAATGGCCATAGGCTTGGAGAGTGGCTCCTTATAAGAAGATGAGGGGCTCATCTCATTTTCCACTCTTGTCTCCAACATATGATTTCTATTGGCCCTTCCAAGAGTATTGGTGATCCTAGCGAATCCCCATATGTGATACATCAAAATGAGTATTTGAAGGAGAACCCTTATGTTATTGttccattgcaaaacattttgaaagGTTTCCTTCCTTGCTCTAATGAACATAACTCAGATACCCTGTTTCCTGATTCACACTGTAGGGTCGAACCAACATATTATTATAGCTTGgatattttcttttcacattgtGCTTTCTAGCATGGTTTCAGGAACTGTGATAGATGTATAACCAGGCCTCTCAGTACAGCTCGGCCAGGCTTGGCTTAGCCCTTTAGTGTGAATCAGGCATCTAGTTGCTAAACCAGCTGGTCGTGTGCCGATGATGATGTATGTTTCTACACATGGATGTTTTGCACACTCATCCAAACAGCACTTCAGGCCCAAGCCTTCACTTTTAGTGTTTTAATTTCTTTTTGcactttatatacagtacatatgtaATCTTATACAGTACAACCAATTAAATGTATGCTAGTGGAAGCTactggtaactgccaaaataaaggaaacgtgagtaatgagggatacaaagtatatcgaaagcaggtgcttccacacttatgtggttcctgagttaattaagcaattaaaacaTCACATCGTGCTAAGGGTAATGtataaaatgcccagttgcccattattttgaaataggggtttaaagggtgtgtgtgtgtgtgtgtgtg
>TU65585
cgttctttcTGTATTGGCTAACGAAGGCCAACAAGTTTGACGCGTTGGTCCACCAGACCTTCTCTCTGTCCAAAAAAGTCCTGCAAGGAGCATAAGACCATGGAACACAGTGTAGGACGAAACGATCTGTTTAGTCATACCACTTCTGTAAAACAGAGAGAATGCATAAGGAGGTTGGCCCTCTTTTTCAAGAGTTGAAGACCTGCATTTCTTTccttaaaatgtaaaaaataaatgtaaaaaataatctcACCAGCTATGCCCCGAGAGAGTAGAGAATTGCTTTGTTTGCTAGGGTATAAACCCTGCATAAACCCTGCCAGGACTGGTTGTGAGTAGGGTATAACTGCTGCCTGAAAGTCACTGGCCATCGAGGGGCTCGAAAATGAGGGGGAGGCCCTATTCCCTTGCTCTGTGTAGACGGAAAAGGGAGGGTAGGTAACATAGTTGAAAAAGCATACGGCATCCCTCTATTTCATTGGTTTGTCAGCTCTCCCGCCCCAAATGGCGTGGTCACCGTTTTTGGGATGGGGTCTCCCATGGCCCTCACACGGTCTTTGCTTCTATCAGGGTGCAGAAAGTCAGTCTGGATAGATGTGGGAAGTGGGCTCTCTCTAGACAGAGCAGGCAATGTATCTGAAGGAAGAAGTATTCAAAATCCTGTattcataaaaaaaaatcctgtatTCACTGAGAAGTAGAAAAGCAATTGACACAAAGCAAAAACCTTTCGTTCAGTACTCAACCTCTCAACAGGGTCTGAAGAGCTACGCTCAGCAAAAATATCCTACACGGTTCGCTTCAGCGCAAATAAGCAGGAAACAGGGTCATGCTGAGATCTAGAGAGCAATAGTCCTCAAGGGGAAGATGAACGAGAATGGCCATAGGCTTGGAGAGTGGCTCCTTATAAGAAGATGAGGGGCTCATCTCATTTTCCACTCTTGTCTCCAACATATGATTTCTATTGGCCCTTCCAAGAGTATTGGTGATCCTAGCGAATCCCCATATGTGATACATCAAAATGAGTATTTGAAGGAGAACCCTTATGTTATTGttccattgcaaaacattttgaaagGTTTCCTTCCTTGCTCTAATGAACATAACTCAGATACCCTGTTTCCTGATTCACACTGTAGGGTCGAACCAACATATTATTATAGCTTGgatattttcttttcacattgtGCTTTCTAGCATGGTTTCAGGAACTGTGATAGATGTATAACCAGGCCTCTCAGTACAGCTCGGCCAGGCTTGGCTTAGCCCTTTAGTGTGAATCAGGCATCTAGTTGCTAAACCAGCTGGTCGTGTGCCGATGATGATGTATGTTTCTACACATGGATGTTTTGCACACTCATCCAAACAGCACTTCAGGCCCAAGCCTTCACTTTTAGTGTTTTAATTTCTTTTTGcactttatatacagtacatatgtaATCTTATACAGTACAACCAATTAAATGTATGCTAGTGGAAGCTactggtaactgccaaaataaaggaaacgtgagtaatgagggatacaaagtatatcgaaagcaggtgcttccacacttatgtggttcctgagttaattaagcaattaaaacaTCACATCGTGCTAAGGGTAATGtataaaatgcccagttgcccattattttgaaataggggtttaaagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65584 False 2451 lncRNA 0.37 1 53967073 53969523
TU65585 True 1707 lncRNA 0.38 1 53967842 53969548

Neighbor

gene id symbol gene type direction distance location
LOC110525297 LOC106573037 coding upstream 570 53955795 ~ 53966503 (+)
LOC110525287 LOC106573038 coding upstream 28597 53913928 ~ 53938476 (+)
LOC110525273 LOC106561706 coding upstream 63228 53886920 ~ 53903845 (+)
LOC118936380 LOC106581842 coding upstream 261652 53632830 ~ 53705421 (+)
LOC118964886 NA coding upstream 280975 53685401 ~ 53686098 (+)
LOC110525327 LOC106573036 coding downstream 75265 54044813 ~ 54089850 (+)
LOC118964411 NA coding downstream 273273 54242821 ~ 54249212 (+)
LOC110525344 pta1 coding downstream 313391 54282939 ~ 54297286 (+)
LOC110525380 LOC106573028 coding downstream 450874 54420422 ~ 54444532 (+)
adal adal coding downstream 475907 54445455 ~ 54464446 (+)
G59016 NA non-coding upstream 11926 53954845 ~ 53955147 (+)
G58964 NA non-coding upstream 112658 53814648 ~ 53854415 (+)
G58963 NA non-coding upstream 153644 53813074 ~ 53813429 (+)
G58962 NA non-coding upstream 154704 53812083 ~ 53812369 (+)
G58992 NA non-coding downstream 74 53969622 ~ 53971233 (+)
G59021 NA non-coding downstream 3840 53973388 ~ 53973959 (+)
G59024 NA non-coding downstream 6750 53976298 ~ 53976613 (+)
G59032 NA non-coding downstream 13088 53982636 ~ 53983252 (+)
G59030 NA non-coding downstream 16982 53986530 ~ 53987396 (+)
LOC110524575 fgf3 other upstream 2516138 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 3883077 50037523 ~ 50184257 (+)
G53181 NA other upstream 5073161 48893497 ~ 48893912 (+)
G52324 NA other upstream 5583816 48380542 ~ 48383257 (+)
G59031 NA other downstream 18592 53988140 ~ 53988597 (+)
G59963 NA other downstream 751640 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 1935960 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 2049928 56019476 ~ 56030371 (+)

Expression


Co-expression Network