G59721


Basic Information

Item Value
gene id G59721
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54279232 ~ 54297288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU66362
TGTTTGTTATACAAACAACAGTAcagtattttattattttatacaaaCCTTGTGTTGCAATTCCAGTCATTTCTATagttcaaaaatacattttgcagaGGAGTTCCATTGTTCCATAGAATTCTAATATTTGTTTCCAGGATATAGACAGTACACATATCCACATACAAAAACGATTCCGCTAAAATCTTCTAAAATATGTATTTCTGAGCTTCTTGGAACATGGTCAACGACATTCATGATCATTGAAGAAATATTATAATTTTGTTCATAGTGTTGTTTGTTTATGTTTAATTTTGTAACTATAGCTTTATTACAACTATCAATAGAAGTTGAGTTCTTTACATTTTCTGTTAAAAATAACATAGGATGGCCTAAAACTATGAAGACTGACTTATATGTCAAGTTTCCTACTGAAAAGAatgtaaagatttttttttaacccttaaaacaaataaaaacacataaCAAGATTGTTTTCGTGAAAAGACATGAACATGAGTGTATAGACAGAGATTGTtgggttgttgttgttttgagaaGGACAAAGCGCTTAGCGGCAGAGACAGAtgctacatcccaaatgacaccctattccttatatattgcactacttttgaccagggccctctggtctaaagtagtgcactatataacagatagggtgtcattttggacacAGTCAGAGACACTGGCTGAGTGTTTGGCAAAGGAGGGTGACGATTGTGCTGCTGAAGTAAGCCAGAAGTCACACCTGCTGTGTCTCAGTCAGTCCTCAAGCTTCACTCTTTAGTTGTCACTCTGTCCTCTTCcctTTCCCTTGGGCTTAGAGGAGCATGGCTTGGTCACCGTGATGGTGGCCTCGCAGTCTAACTTGAACAGGTCTTTCTTCAGGGTTCCTGACCGGCTCTTGagaaagggag
>TU66361
TGTTTGTTATACAAACAACAGTAcagtattttattattttatacaaaCCTTGTGTTGCAATTCCAGTCATTTCTATagttcaaaaatacattttgcagaGGAGTTCCATTGTTCCATAGAATTCTAATATTTGTTTCCAGGATATAGACAGTACACATATCCACATACAAAAACGATTCCGCTAAAATCTTCTAAAATATGTATTTCTGAGCTTCTTGGAACATGGTCAACGACATTCATGATCATTGAAGAAATATTATAATTTTGTTCATAGTGTTGTTTGTTTATGTTTAATTTTGTAACTATAGCTTTATTACAACTATCAATAGAAGTTGAGTTCTTTACATTTTCTGTTAAAAATAACATAGGATGGCCTAAAACTATGAAGACTGACTTATATGTCAAGTTTCCTACTGAAAAGAatgtaaagatttttttttaacccttaaaacaaataaaaacacataaCAAGATTGTTTTCGTGAAAAGACATGAACATGAGTGTATAGACAGAGATTGTtgggttgttgttgttttgagaaGGACAAAGCGCTTAGCGGCAGAGACAGAtgctacatcccaaatgacaccctattccttatatattgcactacttttgaccagggccctctggtctaaagtagtgcactatataacagatagggtgtcattttggacacAGTCAGAGACACTGGCTGAGTGTTTGGCAAAGGAGGGTGACGATTGTGCTGCTGAAGTAAGCCAGAAGTCACACCTGCTGTGTCTCAGTCAGTCCTCAAGCTTCACTCTTTAGTTGTCACTCTGTCCTCTTCcctagaaaaaaaagaagaaaaagtcAGTTGTTTGGATTCAATTGGGCTATTCTCAGTCAAACGGCAAAGTGCATTTTGACAGGGTGGCTATGAAATTCCTTTCAGCATATGAATTGCTTTATTTTCTGCAGTGTTGGGTTTGTGTTTTCATGTTGTTTTGGAGAACCTGCTTTTCCAGTTTAGTGACAAATGCATGCCTGCTAAGGAGTATACCATCAGTATTCAACATCTCCTTAACAAACAGaatttcaaccagttttgcccgCTGGGTTTGTCCTATGGTGGTCTAATAAATGAGATCCGACCTACCTTTTCCTCCCTTTCCCTTGGGCTTAGAGGAGCATGGCTTGGTCACCGTGATGGTGGCCTCGCAGTCTAACTTGAACAGGTCTTTCTTCAGGGTTCCTGACCGGCTCTTGGTGCCGGTGGTCGTGTCACACTCACCCCAATTGGTGAACCTGTACTTGCAGTCAGCTAGAAAGAAATACCATCTATTTTATCATATAAAACATGTTAATCTAATTCCGTTATGATTAGAGaccagagtttttcctgaccacgaTGAGACCTGACCAGTGACCATGAAAAACTATGGGCCCTAGTTACTAATGATGATGGTACAGAATGCAGATACATGTAGTATATTTACATATATGTGaatatatgtatgtactgtatgtgtctgtcagGACCACATCCATCTCCAACATTTGCCCTCGTACCACCAAAGGCCTTCTTCCAGTTGCAGGGGATATTGCACTTGTGTTTGGTGGTGTGCTCACTGCAGGTGGCCTCACGGAACCCATCTCCACAGTCACCAGCATTGGGCACACATTTGCCAAAGCGCTTCTCAGCACACTCTGCTTTGCCCCCCTCTTTGGCTTTCTGACCTTTTTTTGTCACCATGTTTGTGTGCTGCTTCTGCTGTGACCATCAAGGCCACAAGCAGCACAAGTGTCATTGAGAACACACCTTGCATTCTGTGGAGAGAAAATGTAATATCATTATCAACATATTATTGGAAAGTTTACTAGCCACTGGGCTGAAAGAGATGATCAAAAC

Function

NR:

description
Pleiotrophic factor-alpha-1 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66362 False 923 lncRNA 0.37 3 54279232 54297288
TU66361 True 1874 lncRNA 0.40 2 54295267 54297288

Neighbor

gene id symbol gene type direction distance location
LOC110525336 pf21a coding downstream 55246 54113139 ~ 54223986 (-)
LOC110525320 snx33 coding downstream 259682 53989527 ~ 54019550 (-)
LOC118964352 NA coding downstream 404996 53872120 ~ 53874236 (-)
LOC110525263 LOC106581842 coding downstream 411142 53853860 ~ 53868090 (-)
LOC118964340 NA coding downstream 437490 53840583 ~ 53841742 (-)
LOC110525355 LOC106573031 coding upstream 10762 54308050 ~ 54354027 (-)
LOC110525376 LOC106573030 coding upstream 75823 54373111 ~ 54382667 (-)
nat10 nat10 coding upstream 167119 54464407 ~ 54503021 (-)
caprin1b LOC100195798 coding upstream 207408 54504696 ~ 54570298 (-)
tspan18b tspan18 coding upstream 295915 54593203 ~ 54716059 (-)
G59720 NA non-coding downstream 19319 54255010 ~ 54259913 (-)
G59625 NA non-coding downstream 93164 54185486 ~ 54186068 (-)
G59672 NA non-coding downstream 97602 54181174 ~ 54181630 (-)
G59673 NA non-coding downstream 98658 54180086 ~ 54180574 (-)
G59794 NA non-coding upstream 96756 54394044 ~ 54458919 (-)
G59956 NA non-coding upstream 401794 54699082 ~ 54705581 (-)
G59957 NA non-coding upstream 407342 54704630 ~ 54711130 (-)
G59959 NA non-coding upstream 420179 54717467 ~ 54717739 (-)
G59965 NA non-coding upstream 423490 54720778 ~ 54721359 (-)
G58958 LOC106581842 other downstream 482218 53791830 ~ 53797014 (-)
LOC110525178 LOC106581842 other downstream 516336 53761612 ~ 53774544 (-)
G58842 NA other downstream 690462 53588422 ~ 53588770 (-)
G58718 LOC100194703 other downstream 852916 53425964 ~ 53426316 (-)
LOC110525078 LOC105021811 other downstream 940845 53334724 ~ 53338484 (-)
G59978 NA other upstream 431843 54729131 ~ 54737244 (-)
G60516 NA other upstream 773104 55070392 ~ 55070899 (-)
G60572 NA other upstream 852953 55150241 ~ 55154258 (-)
G60614 NA other upstream 896009 55193297 ~ 55193723 (-)
G60624 NA other upstream 906129 55203417 ~ 55203742 (-)

Expression


Co-expression Network