G59468 (LOC100195798)


Basic Information

Item Value
gene id G59468
gene name LOC100195798
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54518384 ~ 54533275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU66100
AGCGAACAGTTAACATTTAATATTGCCTACAACTTTCTTACAAATTCCCAAACTTACATGTACTTTTGCTAACTACATTGGTtcgccatttaaaaaaaaactcacaTTTCTAAGGATGGCAAAGGAACGTGACCAGTTGAGCTATCAAAATATGTATAACTTTGTCCATTTATAACTCAAAAGTGCAAATTAACGTCAATGTCAAAAATGTTGACCTTGGTCGACGGTCTGCTCCTCTGCCAACTCCACTACTGCTTCCAACTGCTGctcctcatccttctcctcctcacaCACTCCATTCTGGTGGGACTGGGCTTTGTCAAAGTACCCGCTTAGCAGCACCCGGTCCAGGCTGTCCTTCAGAGCTTTGTATGTTGTTCCTGCTGCAGCCTTGTCCTTCCCCTCCAACAGATCCATGAAGTGTTGAGAAGCCTCTTCGTACTGGTCAGACAACTGGCGTTTTGGTCTCGTTCTGGCCCCACTAGTTTGTAAAGCTCATCCAGGTTGGTGAGCTCTGAGTCTGTGAGGAGTGAGGGTGTGCCTCCCCCGGCAGCCCCCTGTCTCAACTCCTGCCTTACACTGTCCTCTCCCAGCCTGTCCAGGAGGAACTGGAGCTCCAGCACAGTCTTCAGTCTTTTctgctcagcctcctctctctggaGCTGCTCCCGCCGCACTGCCTTCTTCACTGCCTTCTGG

Function

NR:

description
caprin-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66100 True 699 lncRNA 0.44 3 54518384 54533275

Neighbor

gene id symbol gene type direction distance location
adal adal coding upstream 53938 54445455 ~ 54464446 (+)
LOC110525380 LOC106573028 coding upstream 73852 54420422 ~ 54444532 (+)
LOC110525344 pta1 coding upstream 221098 54282939 ~ 54297286 (+)
LOC118964411 NA coding upstream 269172 54242821 ~ 54249212 (+)
LOC110525327 LOC106573036 coding upstream 428534 54044813 ~ 54089850 (+)
LOC110532453 reln coding downstream 693264 55226539 ~ 55523230 (+)
LOC110532459 NA coding downstream 1029145 55562420 ~ 55671844 (+)
LOC110525494 LOC106573015 coding downstream 1140811 55674086 ~ 55738417 (+)
LOC110525514 LOC106573043 coding downstream 1282096 55815371 ~ 55830186 (+)
LOC118964919 NA coding downstream 1442884 55976159 ~ 56024913 (+)
G59489 NA non-coding upstream 12947 54504700 ~ 54505437 (+)
G59459 NA non-coding upstream 59551 54457380 ~ 54458833 (+)
G59442 NA non-coding upstream 94076 54418685 ~ 54424308 (+)
G59378 LOC106573031 non-coding upstream 196775 54319329 ~ 54321609 (+)
G59300 NA non-coding upstream 333212 54184580 ~ 54185172 (+)
G59525 NA non-coding downstream 37669 54570944 ~ 54571156 (+)
G59542 NA non-coding downstream 59956 54593231 ~ 54594234 (+)
G59987 NA non-coding downstream 205452 54738727 ~ 54738954 (+)
G60010 NA non-coding downstream 221942 54755217 ~ 54755442 (+)
G60067 NA non-coding downstream 270362 54803637 ~ 54803875 (+)
G59031 NA other upstream 529787 53988140 ~ 53988597 (+)
LOC118936380 LOC106581842 other upstream 847111 53632830 ~ 53705421 (+)
LOC110524575 fgf3 other upstream 3067449 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 4434388 50037523 ~ 50184257 (+)
G59963 NA other downstream 187913 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 1372233 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 1486201 56019476 ~ 56030371 (+)
G61804 NA other downstream 1713309 56246584 ~ 56247770 (+)
G61806 NA other downstream 1716613 56249888 ~ 56252015 (+)

Expression


Co-expression Network