G61147 (LOC106573040)


Basic Information

Item Value
gene id G61147
gene name LOC106573040
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55761244 ~ 55767151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU67872
CTTCTCCAGCGTTCTTGGTGACCACAATGAAAGTGACAGGTTTGTTGATGGACCCTTGACAGAGACCAGGGCCGTATGCTGTCACCAGACCACTGTTCATAGCATCCACATAGAACTGGAGGGGGCTTCCTTACCTGTGATCGGTCCCTGCTGTACAGTGAACGGGATGACCAGGTTGAGAGGGCGGAACTGATCCATGCCGTCACTAAGGACAATGGGCTCCTTTGTTGCCTAAAAGGGCATATGATACATGTACGAGTAACTATAGCAAGCTATGTCTATACAAAGTAAAAATGTAACTTTAATGCAGCCTTTTTGACTCAGTTAAAAATGTTGTTAAACCcttataagacattataaagaTTCATACATGATAACAACAAGTTATAAAGCATTAAGTGAAGTATTACCCAATGTTAGTATTGTCCCCCAGAATgctccacaccactctctcaaCAGACAAGTTATAAAGCATTAAGTGAAGTATTACCCAATGTTAGTATTGTCCCCCAGAATGCTCCACACCACTCTCCCTTCCCCCCAATTTGTGTCTCTGATTCAGGAGAAATGTATTTCTATTCCTGTGATACCCACCTTAAGATCAatacactaactgtaagtcactttggataagagtgtctgctaaatgacaaaaatgtaattttcaGGTAATCAAATTTTTGCTATTTTGTAGCTTTGGCAACTATGTGTCTGTTTTCTACCCCAGTTCgctcctctccctgtaggctatacagacagacactcccCACTCCTTGGCTGCTACCCTAATTTAGTGTACCCTGTGCGCATAACCCATGTGGAATTCCTGGTCTCTGGTAGCGTTTGGAACTGCCGATCTGCAGTCAAGAACGCCCGAGTTCATCTCAGTCTATACTGTGCTTCAGTCCCTTAACTTTTTGGCCCTGATggagacatggatcaccccagaCAACACTACTACTCTAGCTGCTCTCTCGTCATCtgattatgttttatttcatagtccGAGAGCATCTGGTCGTCGTCGTGGTGGCACATGGCTACTCATTTCTCCTAAGTGAatattttgtttttttctccctctctcatctgtccatcccctcatttgaattccatgatgtcactgtcacttgtccactcaagcttaacattgttgtcatctatATATTAAATCCTGCAACTAGTGTGGTCCGAACGCCCGACAACCTACCCGCTCGaccccacctcccctcccatttccagaccatctctggagacccattcctcacttccctcatcaactcatccctgaccactgactgcgtcccctctgacttcaaaatggcctgactctctcgttatctctctcagaacaacCTTCTTGACTCTAACCAGTCATGCTTCAAGATTTGTCACTCAACCGaaactgctcttctctgtgtcatgGAGGCTCTCTAAACTGCCAAAGCTAAATCTctatcctctgttctcatcctcctagatctatccactgCCTTCGACACATTGAAACATCAAATCGACCCTCTCAGGGCTTGGCATCTCTGCACACTCTTGggttgcatcctacctggcaggccgatcctaccaggtgatgtggagaggatctgtgtctgcactaCGTACTTTCAcgactggtgtcccccagggcttggCTCCTTCTCTCTATATACCAAGTCACTGAGCTCCTttatatcctcacatggtctctcctatcattgctatgcagatgacactcaactacttttcttcttccccccttctgacactcaggtggcgacacgcatctctgcgtgcctggcagatatatcagcttggatgtcggcccaccacctcaagctcaacctcgacaagacgaAGCTGCCCTTTTTTCCGGGGAAGGCCTGCCcactcaaagacctctccatcacagttgacaactccacagtgtcccCTTCCCAGAGTGGAAATCCTTTGCCAAGACCcaggacaacaccctgtcgttctctgtcAAAATAAAAGCAGttactcgctcctgcaggtttatgctctacaacatccgtagagtacgaccctacctcacatgAAGTGGTGCAGGTCCTagtccaggcacttgtcatctcccatctggactactgcaactcgatGTGGTCTGGGCTCCCGCTTGTGCCATCATACCCCTGCAACTATTCCAGAATGCTGCAGCCAACCTGGTGTTCAActttcccaagttctcccatgtcaccccactcctccgcacactccactggcttccagcaGAAGCTCgaatccactacaagaccatagTACTTACCAACCGAGTAGCAAGAGGAACTGCTCCTCCCTACCCTTCAgactatgctcaaaccctacacccaaATCCAAGCACTCctttctgccacctctggtctttTGGCTCCCGCTCTtaccagtccaagctcttctctgtcctggcacaccaatggtggaaccagcttctcCCTGTAGCTAGGACAGCAGAGGCCCTACCCAtattctgaaaacatctgaaaccctacctcttgaAAGAGTATCGTAAATAATCCCAGAGCACCCTcgcttactatgactgtgatatgtggttgtcccaactagctacagtatcttattaagatgaatgcactaactgtaagttgtTCTGCGTAAAAACGTCTGCAAAAGACACAGacgtttcttctgaaacttgtcagtctattcttgttctgagaaatgaacgctgtgtgctactcccttcacagaacagcgcaaactggctctaaacaGAATAAAAAGAGGTGTGGGAGGCAACGGAGcaagccttaatttctcagaacaagaatatattgacaagtttcagaagaaagtttctggccattttgagcctgtaatcgaaccctgctgatgctccagatactcaactagtctaaataaggccagtttaattgcttctttaatcaggacaacatttttcagctgtgctaacataattgaaaaaggtttttctaatgatcaattagccttttaaaattggaacacatgagtgatggttgctgataatgggcctatgtacagaggcccattaggtagatattccataaaaatctgccgtttccagctaaaatagtcaattacaacattaataatatgtacactatatatctgatcaatttgatgttattttaatggacaaaaaattggcTTTTCTTTTAAAAtcttagtgaccccaaacttttgaatagtagtgtgtatatatattaatTAACACACAAATCTATATTACTAATATGTACTCAACCGTAACATGGAAGGGGCTCCTGGGTATGTGCTGTCCTCCGAAGCGGATGGTGATGACATATTTTCCTGGTTCTGGAGCGGTGTAGTAGATCTCGAAGGTTCCATCACGGTTCTCCTGCACATCCATGTCTAGCTCCACCCCCTCTGGGGTCATGACCGAGCAGGTCACCTTGCCCTTCCCAGCAGCCTTTGTGTCCACAGAGATGATGGCCTCCTCGTGCAACTGCATCTTAGTCAGACCTGATGCCAGGGCATGTCCTTCGATAGACACTGGGAATAAGGAGAGAGAAATTTGTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605384, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67872 True 3564 lncRNA 0.47 2 55761244 55767151

Neighbor

gene id symbol gene type direction distance location
LOC110525494 LOC106573015 coding upstream 22827 55674086 ~ 55738417 (+)
LOC110532459 NA coding upstream 89400 55562420 ~ 55671844 (+)
LOC110532453 reln coding upstream 238020 55226539 ~ 55523230 (+)
adal adal coding upstream 1296798 54445455 ~ 54464446 (+)
LOC110525380 LOC106573028 coding upstream 1316712 54420422 ~ 54444532 (+)
LOC110525514 LOC106573043 coding downstream 48220 55815371 ~ 55830186 (+)
LOC118964919 NA coding downstream 209008 55976159 ~ 56024913 (+)
LOC110525521 LOC106576899 coding downstream 784597 56551748 ~ 56596653 (+)
eif3s6ip LOC106576896 coding downstream 1127101 56894252 ~ 56904226 (+)
vsir cssa18h10orf54 coding downstream 1268457 57035608 ~ 57062851 (+)
G61137 LOC106573040 non-coding upstream 10938 55746088 ~ 55750306 (+)
G61033 NA non-coding upstream 201582 55546568 ~ 55559662 (+)
G61013 NA non-coding upstream 226144 55534893 ~ 55535100 (+)
G60638 NA non-coding upstream 549093 55211884 ~ 55212151 (+)
G61164 NA non-coding downstream 30122 55797273 ~ 55797489 (+)
G61168 LOC106573040 non-coding downstream 33399 55800550 ~ 55801438 (+)
G61175 NA non-coding downstream 42600 55809751 ~ 55809982 (+)
G61186 NA non-coding downstream 72011 55839162 ~ 55839841 (+)
G61194 NA non-coding downstream 129125 55896276 ~ 55896883 (+)
G59963 NA other upstream 1039781 54721188 ~ 54721463 (+)
LOC110525327 LOC106573036 other upstream 1698990 54044813 ~ 54089850 (+)
G59031 NA other upstream 1772647 53988140 ~ 53988597 (+)
LOC118936380 LOC106581842 other upstream 2089971 53632830 ~ 53705421 (+)
LOC110524575 fgf3 other upstream 4310309 51449353 ~ 51451460 (+)
G61202 LOC106573044 other downstream 138357 55905508 ~ 55923376 (+)
G61284 LOC106573044 other downstream 252325 56019476 ~ 56030371 (+)
G61804 NA other downstream 479433 56246584 ~ 56247770 (+)
G61806 NA other downstream 482737 56249888 ~ 56252015 (+)
G63958 NA other downstream 2399414 58166565 ~ 58168178 (+)

Expression


Co-expression Network