G61218 (LOC106560732)


Basic Information

Item Value
gene id G61218
gene name LOC106560732
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55932232 ~ 55934327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU67950
CTTGaatggcactgaccgccactggtgtagtgtgtgtgtatagtgtactACAGTAGTGATTAGTGTATACGTAGTATAGTAGTGATTAGTGAATTAGTGTATACATTGTAGTGAATTCTACTCACTGAAGAAGTGGACTCTCCTCCGGACCTTCAGGCTGACCTGACCATTGTGTGCAGCGGCGTGCATCAGGTCGATCACGTATCTGTGTGGTTTCCCAGCAACCACCATTTTATCCACGGAGATGAGCTCGTCCCCAGGTCGAAGACGTCCATCGCGCTCTGCAGGAGTGTTCTCTATGATCGCCCCAATCACAATCATACGAGCCTTGTCGCGGGCGTCCGGACTCACAGCCTGCACGGCCTCGTCTCCCCCCAGGATGCGGAAGCCAAACCCAGTCTTCTCCCTCAACAGGTGAACTTCCACCTCCTGGTACTCTGGACCTgatagggggagagaaagagagagtgggagggaggcacagggagaaagggaggggatgaggaaggagagggaagggagagggagagagagggag

Function

NR:

description
membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67950 True 538 lncRNA 0.54 2 55932232 55934327

Neighbor

gene id symbol gene type direction distance location
LOC110525514 LOC106573043 coding upstream 102046 55815371 ~ 55830186 (+)
LOC110525494 LOC106573015 coding upstream 193815 55674086 ~ 55738417 (+)
LOC110532459 NA coding upstream 260388 55562420 ~ 55671844 (+)
LOC110532453 reln coding upstream 409008 55226539 ~ 55523230 (+)
adal adal coding upstream 1467786 54445455 ~ 54464446 (+)
LOC118964919 NA coding downstream 41832 55976159 ~ 56024913 (+)
LOC110525521 LOC106576899 coding downstream 617421 56551748 ~ 56596653 (+)
eif3s6ip LOC106576896 coding downstream 959925 56894252 ~ 56904226 (+)
vsir cssa18h10orf54 coding downstream 1101281 57035608 ~ 57062851 (+)
LOC110525562 LOC106576893 coding downstream 1687940 57622267 ~ 57765398 (+)
G61198 NA non-coding upstream 30890 55900996 ~ 55901342 (+)
G61196 NA non-coding upstream 33156 55898060 ~ 55899076 (+)
G61194 NA non-coding upstream 35349 55896276 ~ 55896883 (+)
G61186 NA non-coding upstream 92391 55839162 ~ 55839841 (+)
G61175 NA non-coding upstream 122250 55809751 ~ 55809982 (+)
G61262 NA non-coding downstream 61018 55995345 ~ 55999178 (+)
G61380 NA non-coding downstream 213575 56147902 ~ 56148117 (+)
G61383 NA non-coding downstream 215233 56149560 ~ 56149847 (+)
G61384 NA non-coding downstream 215866 56150193 ~ 56150566 (+)
G61721 NA non-coding downstream 226358 56160685 ~ 56160921 (+)
G61202 LOC106573044 other upstream 8856 55905508 ~ 55923376 (+)
G59963 NA other upstream 1210769 54721188 ~ 54721463 (+)
LOC110525327 LOC106573036 other upstream 1869978 54044813 ~ 54089850 (+)
G59031 NA other upstream 1943635 53988140 ~ 53988597 (+)
LOC118936380 LOC106581842 other upstream 2260959 53632830 ~ 53705421 (+)
G61284 LOC106573044 other downstream 85149 56019476 ~ 56030371 (+)
G61804 NA other downstream 312257 56246584 ~ 56247770 (+)
G61806 NA other downstream 315561 56249888 ~ 56252015 (+)
G63958 NA other downstream 2232238 58166565 ~ 58168178 (+)
G63959 fgfr2 other downstream 2287195 58221522 ~ 58223130 (+)

Expression


Co-expression Network