G62520 (cdh23)


Basic Information

Item Value
gene id G62520
gene name cdh23
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57067840 ~ 57068054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU69398
GTACCGTCGTCCTCCACCATCACGGTCAGCCGGTACTCCTGCTGGCGCTCACGGTCGGGTGGGCATGGTCGGGTTGTCATCTCACCTGTCATGCGGTCCATACGGAAGGTGAGGTCCTGGTTACCCGAGGTGATGTAGTAGAAGAGCATGGCGTTTGTCCCGATGTCATGGTCTGTGGCCACCACGCGCAGGACGGACGTACCACCCCccacatt

Function

symbol description
cdh23 Enables transmembrane transporter activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; equilibrioception; and mechanoreceptor differentiation. Located in cilium. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23).

NR:

description
PREDICTED: cadherin-23

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69398 True 215 lncRNA 0.54 1 57067840 57068054

Neighbor

gene id symbol gene type direction distance location
vsir cssa18h10orf54 coding upstream 4989 57035608 ~ 57062851 (+)
eif3s6ip LOC106576896 coding upstream 163614 56894252 ~ 56904226 (+)
LOC110525521 LOC106576899 coding upstream 471187 56551748 ~ 56596653 (+)
LOC118964919 NA coding upstream 1042927 55976159 ~ 56024913 (+)
LOC110525514 LOC106573043 coding upstream 1237654 55815371 ~ 55830186 (+)
LOC110525562 LOC106576893 coding downstream 554213 57622267 ~ 57765398 (+)
LOC118964920 NA coding downstream 626444 57694498 ~ 57722025 (+)
wdr11 wdr11 coding downstream 738080 57806134 ~ 57940604 (+)
LOC110525578 NA coding downstream 893662 57961716 ~ 57963823 (+)
fam160b1 fam160b1 coding downstream 1740316 58808370 ~ 58838199 (+)
G62504 NA non-coding upstream 48088 57019442 ~ 57019752 (+)
G62501 NA non-coding upstream 50975 57016367 ~ 57016865 (+)
G62447 NA non-coding upstream 55108 56960399 ~ 57012732 (+)
G62415 NA non-coding upstream 156023 56911606 ~ 56911817 (+)
G62414 NA non-coding upstream 157465 56910168 ~ 56910375 (+)
G62524 NA non-coding downstream 8614 57076668 ~ 57076895 (+)
G62565 NA non-coding downstream 68785 57136839 ~ 57137089 (+)
G62566 NA non-coding downstream 69943 57137997 ~ 57138199 (+)
G62571 NA non-coding downstream 79302 57147356 ~ 57147649 (+)
G62580 NA non-coding downstream 90487 57158541 ~ 57158781 (+)
G61806 NA other upstream 815825 56249888 ~ 56252015 (+)
G61804 NA other upstream 820070 56246584 ~ 56247770 (+)
G61284 LOC106573044 other upstream 1037469 56019476 ~ 56030371 (+)
G61202 LOC106573044 other upstream 1144464 55905508 ~ 55923376 (+)
G59963 NA other upstream 2346377 54721188 ~ 54721463 (+)
G63958 NA other downstream 1098511 58166565 ~ 58168178 (+)
G63959 fgfr2 other downstream 1153468 58221522 ~ 58223130 (+)
G64292 NA other downstream 1518804 58586858 ~ 58587585 (+)
G64315 NA other downstream 1597280 58665334 ~ 58665906 (+)
G64338 NA other downstream 1631242 58699296 ~ 58700379 (+)

Expression


Co-expression Network