G64242 (LOC106586415)


Basic Information

Item Value
gene id G64242
gene name LOC106586415
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58591113 ~ 58661566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU71188
ATCCCCATCTTTGCAGGAAGGTCCATAGAGGGACGTTTTAATGGTTTTGTTCTCTTACAGTCAAATCAGTAATTTTATATCCTGGAATGACAGCATGTCAGCTATATTCAAACATAAATCAATGATTACTCAGTAGCGGTCCAATTAAGAGACACTTATTTTAGCACTTGCTACTGCAGGGTTTTTGTGATAAACTACCGCTAGAAGGCACTAAAGCACCATGTTGCATATGCATTGAGGAATTGTTCTGCCAATACCGTGCCGTAATCAAACTTTTTAGTGCCTGCAACTGCATGGACTGGCATAGCCCAGCTATGCTGCTTGTGTCTTTGACTTGATCCAGTCAAGGTAATGGGAGACCCGTGCGTAGACCCCAGGCTTGTTCTTCAACCCACACTGGTCTCCCCAGCTCACTATACCGTAGATGAAATGGGAGCTCTCCTTGTTACACGTCAGTGGCCCTCCAGAGTCACCCTtggaggagtggcggagtgagttctgggccatctctgttCACTTCCACGGCCGGTTctggcaataagacctcagaaatctacccacatcctggttaactctctccacctgcctgttactctcggggtgaaaacctgaggtaaggctgaccgagacccccaaaaGTTCCATGAACACCCTCCAGACcctcgaagtgaactggggaccccgatcagacactatatcctcaggtaccccatagtgccggaagacgtgagtaaacagggcctccgcagtctgtagggccgtagggagaccgggcaaagggaggagacgaggaTTGTGGTTTttccctgtgaaggtggaagatcggttattaaatccaccgacaggtgcgaccacggccgttgtggaacgggcaGGTGTTGTAACTTACCtttgggcaggtgcctaggagcattacactgggcgcacaccaaGCAGGAGggaacataaaccctcacatccttagcctaagtgggccaccagtacttcccactaagacagctCACTGTCCGACCGATCCCAGGACGACATGTGAGCCCTAAAGATCAGCCGGTTGCGGACAGCAGACAGAACGgacagacgcccagctggacaccGAGGGGTAGGGGGCTCTGCACGTATTGCCCGCTCAATCTCCgcatccagctcccacactaccggttCCACCAAGCaagaggtggggagtatgggagtgggatccatggaacgcttctctgtgtcacactgccgggacagtgcgtctgacTTAACAttttgggaacctggtctgtacgaaagggtgaaaacaaaacgggtgaaaaacatggcccaccttgcctggtgagggttcagtctcctcgctgcctggatgtactccagattgctgtggtcagtccaaatgagaaaagggtgtttagccccctcaagccaatgtctccacgccttcaaggccttgactacagccaacagctcccagtcccccacgtcatagttttgctccgccgggctgagcttcttcgagaagaaggcacaggggcggagttTCGGTGGGGTATTTGAGTGTTGAGAGAGCaccgctcctatcccagcctcggacgcgtccacctccaatGTGAACGctaaagagggatccggatgggccagcacgggtgccgaggtaaacagagcccttagttgcccaaaagccctgtccgcctcaactGACCACTGCAGACGTACaggaccccccttcagcagtgaggtaatgggagcagtcAACTGACCAAAACCATGGATAAATCTCCAGTAGTAATTGGCAAATCCCCAAAAAtcactgcacctcctttaccgtggagggagtcggccaattacgcacggctgaaatgcggtcactctccgtctccacccctgatgtggaaatgcaataccctaggaaggagatggcttgatgaaagaacaggcatttctcagccttgacatactggtcatgctccaacaggcgaccaagcactctgcgcaccaaggacacatgctcggcgcgtgtagcggagaatatcaaaatgtcatcaatatacaccactacaccctgccggtgcaggtccctgaaaatcttgtctacaaattCTTGGAAGACTGAGggcgcattcatcaacccgtacggcatgacgaggtactcatagtgcccagaggtggtactgaaagccgtcttccactcatctccctctcaGATACGTACCAGGTTGTAAgtgctcctgagatctagtttggtgaagaagcacGCCCCGTGCATTGGTAgagggtaactatacctcaccgTGATCTGATTCAGACCCCGATAGTCAATGCACGGGTGCAGATCCcaatccttcttcttcacaaaaaaggaactcgaggaggcgggtgaagtggaggaccgaatgtacccctgacgcagggattctaaaacatatgtttccatagcctctgtctccgcctgtgagaggggatacacgtgactcctgggaagtgcggcATCTGCCAGGCGGTCTTTCGCACAATCGCCCATCGATTGAGAGAGCCAAATCAGGGGGAATGCGCAccgtggagacctggtctggactctccatcGTTGTAGCaccaacacctacctgagcactctcgcgaccaccccatgagagccctctgtggccaagaaacagtggggtaaTGAAAAGCTAaacagggtaggcccagcaccacgggaaacgcaggagagtcaatgaggaagagactaattctctctgTATCACCCCCCTGCATCACCATACCCAACGGCGTGGTGACCTCCCTAAttatccctgaccctaatggtgaACGGGGAAGAGCACATCCACGGGAAAAATGGgggtccctaaactatgagctaacgCTCTAtcaatgaaattcccagccgcgcctgaatcgacaagcgccttatgctgggaatctGGAGAAAACTAAGGAAAAGTGATAGacacaaacatatgtgcaacagagggctctgagaGAGAATTGTGCCAGCTCACCTGGTGTGATGCccgagtgccctgcctgctgcctcgattcccagaggaaccaacccggcaccgaccggcagtgtgacctctgagGCCACAGATGCTGCACaagcgggaaccccctccggtctccctgcccaccgcccctcccagctccataggTATCGGAGAGCGGGTGCGGGAGGATTGAACCACCAGTTCCTGATCTAGACATCCATgagtagccagcaggttgtccagtcggatagacaggtccaccagctggtcgaacgtgagggtggtgtctcttcAGGCCAGCTCCCGATGGACGTCCTCGCGCAGACTGCAACGATAATGGTcaatcagggccctgtcgctccatcccGTGCCGGCAGCCTAAACTCCAGGGggaactcctgggcgctcctcgtctcctgcctcagatggtagaggcgctcacccgccgctctacCCTCGGGCCGGCAGTCGAAGACTGCCCGGAAACGGCGGGAGAACTCCTCAAACTTgtccaacgccgcatctccctctctccatacggtgttggcccactccagggctctccCGGTGAGGCTCGAGATGAGGGAGGACACCCTCTCACGATCCGATGGAGCCAGGTGGACGGTGGCCAGATAATTGCAGTAAAAACATAACTGCATGCTCCTGGATGCGCTCCTCCACCTCAATGGCCGGGGTACcctctcctgctgactccatagcaAGGTCGGAGATTCTGTAATGtggtgcgtgctggtggcagggaagtcaggcgcaggagaatgaacTTGGTAAATCGGAGCTGTTTAATAAACATCAAAACTTCCGAAAACCAatgtatacaaaataacaaatagagggtgcaaaacccgtcgcacaacagaaataacaataaacacctacatacaacaaacaatctccgacaaggacatgaggggaaacagagggttaaatacacaacatgtaattgaagggattggaaccaggtgtgtaggaagacaaaaccaatggaaaaagtaaaaatggatcaatgatggctagaaggtcggtgacgtcgaccgccgaacaccgcccgaacaaggagagggacctacttcggcagaagtcgtgacagtagtTTATAGAGTTCTGGTGTTTATCACTAACAATGGGTTACACACATATGAACTCAAATAAATTTGTTGGacatttttgtttgagtgttagTTCAATGTAACTAAGCTATTCACAGTACTGTAAGGATAGTGGAGACAGGCTACTCACAGTTGGAGTCGATGATGTCTTTGCCGGGTCCTGGGGATGTGGGCTGGACACAGTACTGACACAGACAGTCTTTGCCATTGAAGGTGACCCTATCCCCAGCCGGAAATGGTCGTCtgtgggagagacagacagatacatgttCTAATGGTCAGACACCAAACAGATACAGATGGATAATGTAGCACAGGTCACATTAGGGTATGTTTGGCTGAGAATATCCCATGTATTGAGTAACAGTGTATAattttatttgtttaactaggcaagtcagttaagaacaaattcaaattttcaatgatggcttaggaatagtgggttaactgccttgttcatggacagaatgacagatgtttaccttattgtctcggggattcgatctagcagcctttcggttactagtccaacgctctaaccactaggttacctaccaCCCTGTATGATGACGTGAACGTGTTTCAGCATTGTTGGAGTGACCCTTTTCAAGACCAAATAAATCGATGTAGATAAGAAGATGCAGTCAGGTTGATAAGAAGAGTACAATAAGGTGAACAATAAGAGTAATGAGATAGATAATGAGTAATGCTTCTAGCTCTTGACCAGGGCTCCTTTGAAAAATAGATTCTCAAAAGTACTCTCCTGAATAACTATCATGCTGACTAGA

Function

NR:

description
Pol polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71188 True 4887 lncRNA 0.51 2 58591113 58661566

Neighbor

gene id symbol gene type direction distance location
LOC110525578 NA coding upstream 627290 57961716 ~ 57963823 (+)
wdr11 wdr11 coding upstream 653125 57806134 ~ 57940604 (+)
LOC110525562 LOC106576893 coding upstream 825715 57622267 ~ 57765398 (+)
LOC118964920 NA coding upstream 869088 57694498 ~ 57722025 (+)
vsir cssa18h10orf54 coding upstream 1528262 57035608 ~ 57062851 (+)
fam160b1 fam160b1 coding downstream 146804 58808370 ~ 58838199 (+)
trnaa-ugc NA coding downstream 400241 59061807 ~ 59061880 (+)
LOC110525756 NA coding downstream 548440 59210006 ~ 59212175 (+)
erlin1 LOC106576878 coding downstream 622758 59284324 ~ 59299682 (+)
si:ch211-217g15.3 LOC106576876 coding downstream 678973 59340539 ~ 59342276 (+)
G64293 NA non-coding upstream 3000 58587833 ~ 58588113 (+)
G64248 NA non-coding upstream 4419 58585290 ~ 58586694 (+)
G64274 NA non-coding upstream 30643 58560233 ~ 58560470 (+)
G64273 NA non-coding upstream 31843 58559071 ~ 58559270 (+)
G64269 NA non-coding upstream 36543 58554212 ~ 58554570 (+)
G64312 NA non-coding downstream 145 58661711 ~ 58661946 (+)
G64313 ablim1 non-coding downstream 647 58662213 ~ 58662478 (+)
G64324 NA non-coding downstream 20180 58681746 ~ 58682194 (+)
G64325 NA non-coding downstream 21177 58682743 ~ 58682956 (+)
G64336 NA non-coding downstream 35134 58696700 ~ 58697100 (+)
G64292 NA other upstream 3528 58586858 ~ 58587585 (+)
G63959 fgfr2 other upstream 367983 58221522 ~ 58223130 (+)
G63958 NA other upstream 422935 58166565 ~ 58168178 (+)
G61806 NA other upstream 2339098 56249888 ~ 56252015 (+)
G61804 NA other upstream 2343343 56246584 ~ 56247770 (+)
G64315 NA other downstream 3768 58665334 ~ 58665906 (+)
G64338 NA other downstream 37730 58699296 ~ 58700379 (+)
G65442 NA other downstream 663070 59324636 ~ 59325129 (+)
G66188 NA other downstream 1279920 59941486 ~ 59942064 (+)
G67806 LOC106581772 other downstream 2653308 61314874 ~ 61315252 (+)

Expression


Co-expression Network