G67056 (rrp12)


Basic Information

Item Value
gene id G67056
gene name rrp12
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60417294 ~ 60421548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU74278
TGAAAATGTGGTTGAAGAGAATTTCagatcacttctctctctcctcccataaCAAAGAGTGAgtttgggtgtctgtgtgtgtgtgtgtgtcctactacCTTTAGTCTTGTCTCCCTCGTCATTGTCCTCTTTGATGATGAGTCTTCCGTCTGACGTGACCTTGAAGTTGTGCTGAACTTTTGCCCTCTTCTTCATGTCTGGGTTGgtggCCAAGACCCTCTGGGAGACAGTGGGATCCAGGAAGTTGAGTGGTTCGTCTCCTTGTCCCTCCTTCAGCCAGGCCCGCCCCTTCTGCTTTGTGGGCTTCTTCTGGGTCTTAGCGCCCTTAGGCCTTTCGTCATCTGACATATCAGAGTCCGACTCGGCCAAGATCTCCTCAATactgagCTCCCCGGGCTTTTGGCTTGTCGTCCCCGCTGTCTGAGTCGTCGTGGTCTTCGTCCGCCAGTCTCGATCTCTTGGTTCTGGCCTCAGCCTTACGGATGTTCACCAACACCTTATGATGCTCCACAGGCAGCTTGCTTTTCACCAACTCAAACCCAAACTTCCTGATGAACTTGGTGAAAATGTTTTTCAGTTTCGTCCTGAAGTGTCTTCTAACGTCATCCTTGATGTTCCCAACACcctccatCATCACAGTGACGTGTCCAGCCAGTGTCTTGGGATCCATGACGAAGAGGATGACCTTGACAAAGCTGAGCGCTGCTTTCACAATCTCCCTGGTCCGAGACGTCAGCAGCAGGCACACGTTGTGTAGGAGGTGCTCCATCGATCCCATGTCTATAGAgtctgacacgcacacacacacacactttgtaacAGCTGCGCCAGTGATGAAATCAGCTAGAACAGGGCTGTCAAAC

Function

symbol description
rrp12 Predicted to be involved in rRNA processing. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; intestinal bulb primordium; musculature system; and nervous system. Orthologous to human RRP12 (ribosomal RNA processing 12 homolog).

NR:

description
RRP12-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74278 True 863 lncRNA 0.51 5 60417294 60421548

Neighbor

gene id symbol gene type direction distance location
LOC110526081 NA coding downstream 67985 60342589 ~ 60349309 (-)
LOC110532500 NA coding downstream 81073 60334984 ~ 60336221 (-)
LOC110526047 LOC106576854 coding downstream 115981 60281672 ~ 60301313 (-)
LOC110525977 LOC106576859 coding downstream 244752 60130315 ~ 60172542 (-)
LOC110525964 LOC106576862 coding downstream 293152 60089990 ~ 60124142 (-)
LOC110526097 LOC106576849 coding upstream 8636 60430184 ~ 60495300 (-)
gdf10a LOC106576847 coding upstream 103871 60525419 ~ 60538921 (-)
LOC110519525 LOC106576846 coding upstream 238919 60660467 ~ 60695525 (-)
LOC110532522 LOC106576846 coding upstream 273587 60695135 ~ 60707046 (-)
LOC118964986 LOC106576846 coding upstream 294396 60715944 ~ 60717300 (-)
G67011 NA non-coding downstream 45913 60369797 ~ 60371381 (-)
G66969 NA non-coding downstream 101054 60316038 ~ 60316240 (-)
G66966 NA non-coding downstream 104238 60312810 ~ 60313056 (-)
G66967 NA non-coding downstream 108391 60308645 ~ 60308903 (-)
G66922 NA non-coding downstream 153093 60261877 ~ 60264201 (-)
G67094 NA non-coding upstream 75531 60497079 ~ 60497308 (-)
G67095 NA non-coding upstream 76945 60498493 ~ 60498701 (-)
G67096 LOC106576848 non-coding upstream 77563 60499111 ~ 60499334 (-)
G67099 NA non-coding upstream 84291 60505839 ~ 60506099 (-)
G67023 NA non-coding upstream 100265 60521813 ~ 60522228 (-)
LOC110525695 LOC106576879 other downstream 1262149 59144373 ~ 59199471 (-)
G65147 NA other downstream 1631677 58784742 ~ 58785617 (-)
G63328 NA other downstream 3018806 57397194 ~ 57398488 (-)
G63093 NA other downstream 3354446 57035667 ~ 57062848 (-)
G61978 NA other downstream 3883319 56524970 ~ 56533975 (-)
G68736 NA other upstream 1260730 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 1560183 61981652 ~ 61983330 (-)
G69210 NA other upstream 1989974 62411522 ~ 62418296 (-)
G70013 NA other upstream 2855660 63277208 ~ 63277752 (-)

Expression


Co-expression Network