Gene
RNA
| Item | Value |
|---|---|
| gene id | G68617 |
| gene name | lrrfip2 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 61384295 ~ 61399594 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lrrfip2 | Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hatching gland; myotome; pectoral fin; and somite. Orthologous to human LRRFIP2 (LRR binding FLII interacting protein 2). |
| description |
|---|
| leucine-rich repeat flightless-interacting protein 2 isoform X11 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU75943 | True | 439 | lncRNA | 0.45 | 3 | 61384295 | 61399594 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| abcc2 | mrp2 | coding | downstream | 72318 | 61246276 ~ 61311977 (-) |
| LOC118964986 | LOC106576846 | coding | downstream | 666995 | 60715944 ~ 60717300 (-) |
| LOC110532522 | LOC106576846 | coding | downstream | 677249 | 60695135 ~ 60707046 (-) |
| LOC110519525 | LOC106576846 | coding | downstream | 688770 | 60660467 ~ 60695525 (-) |
| gdf10a | LOC106576847 | coding | downstream | 845374 | 60525419 ~ 60538921 (-) |
| mlh1 | mlh1 | coding | upstream | 3436 | 61403030 ~ 61418074 (-) |
| LOC110526202 | LOC106576840 | coding | upstream | 18785 | 61418379 ~ 61429118 (-) |
| LOC110526243 | LOC106576835 | coding | upstream | 142090 | 61541684 ~ 61544247 (-) |
| dnajc12 | djc12 | coding | upstream | 145084 | 61544678 ~ 61548916 (-) |
| tial1 | tial1 | coding | upstream | 252714 | 61652308 ~ 61676942 (-) |
| G68613 | NA | non-coding | downstream | 54452 | 61329572 ~ 61329843 (-) |
| G68609 | NA | non-coding | downstream | 61490 | 61322148 ~ 61322805 (-) |
| G67804 | NA | non-coding | downstream | 71399 | 61312637 ~ 61312896 (-) |
| G67763 | NA | non-coding | downstream | 141105 | 61242464 ~ 61243190 (-) |
| G67762 | NA | non-coding | downstream | 142351 | 61241325 ~ 61241944 (-) |
| G68701 | NA | non-coding | upstream | 96667 | 61496261 ~ 61496591 (-) |
| G68703 | NA | non-coding | upstream | 99080 | 61498674 ~ 61498984 (-) |
| G68704 | NA | non-coding | upstream | 99637 | 61499231 ~ 61499449 (-) |
| G68705 | NA | non-coding | upstream | 100211 | 61499805 ~ 61500046 (-) |
| G68713 | NA | non-coding | upstream | 109409 | 61509003 ~ 61509718 (-) |
| LOC110526097 | LOC106576849 | other | downstream | 923061 | 60430184 ~ 60495300 (-) |
| LOC110525695 | LOC106576879 | other | downstream | 2229150 | 59144373 ~ 59199471 (-) |
| G65147 | NA | other | downstream | 2598678 | 58784742 ~ 58785617 (-) |
| G63328 | NA | other | downstream | 3985807 | 57397194 ~ 57398488 (-) |
| G63093 | NA | other | downstream | 4321447 | 57035667 ~ 57062848 (-) |
| G68736 | NA | other | upstream | 282684 | 61682278 ~ 61686308 (-) |
| LOC110526417 | LOC106576819 | other | upstream | 582137 | 61981652 ~ 61983330 (-) |
| G69210 | NA | other | upstream | 1011928 | 62411522 ~ 62418296 (-) |
| G70013 | NA | other | upstream | 1877614 | 63277208 ~ 63277752 (-) |
| LOC110526867 | LOC100136521 | other | upstream | 2970308 | 64369803 ~ 64384521 (-) |
