G67847 (mlh1)


Basic Information

Item Value
gene id G67847
gene name mlh1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61409429 ~ 61410616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU75096
TTATTATTCACCTCAATTCCAAAATTGCAGTTTCTCTTTTTTACTACTACTGATTCTACACACCAACCAATCCACTAAAGAAAAGAAAGAGAATTCCATACACCCAGTTTAGCTTATtggcacatactgtatgttgtgttaAATACCTAGTAGTATAATATCCTGttaaaaacaatacaaatgaGAAGACATTCAGCATGGAGGACTGCCGAGCTAACAGCACCTGTGTGAAGTACGTGCGTGAGGAGTTGGAGCCCAGGAGTTTGCTCTCTATCTGTCTTTGAACGCTCTCGATGATACAGTCTTCGTGGAGGAAGTGCACCTCGTGTTTGGTAGGGTGGACATTCACGTCGATGTTATGAGGGGCAATCTCCAGGCTGAGATATAGAAATGGGTGAGAGTTCTTGGGAAGGTATGCAGCATAAACGGTCTCAATGGCTTTTTTTAAGGCACTCGATTCAACCAGACGATGATTGATGAAGAGGATGAGGATGCACTTCTTCACTGAGTAGTTGGCGTTGGAGATGTGGCCCTTCAGCTTATAGGCAAGCTTCTGATCCTCACAGCCCACTTCAATCAGCTCcCTGCTGACTGTATTGCCGAACACCACACGGATATTATCCAGTATGGAG

Function

symbol description
mlh1 Predicted to enable ATP hydrolysis activity. Acts upstream of or within meiosis I and spermatogenesis. Predicted to be located in nucleus. Predicted to be part of MutLalpha complex. Is expressed in testis. Human ortholog(s) of this gene implicated in Lynch syndrome (multiple); gastrointestinal system cancer (multiple); lung cancer; mismatch repair cancer syndrome; and sporadic breast cancer. Orthologous to human MLH1 (mutL homolog 1).

NR:

description
DNA mismatch repair protein Mlh1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75096 True 632 lncRNA 0.51 4 61409429 61410616

Neighbor

gene id symbol gene type direction distance location
lrrfip2 lrrfip2 coding upstream 7622 61342105 ~ 61401807 (+)
LOC110526122 LOC106576844 coding upstream 182304 61117250 ~ 61227125 (+)
LOC110526134 NA coding upstream 277424 61091580 ~ 61132005 (+)
prdm8 LOC106576848 coding upstream 907811 60496970 ~ 60501618 (+)
rrp12 rrp12 coding upstream 981718 60403081 ~ 60427711 (+)
LOC110526206 fam83h coding downstream 26991 61437607 ~ 61488427 (+)
LOC110526212 LOC106576837 coding downstream 90398 61501014 ~ 61505305 (+)
herc4 herc4 coding downstream 107337 61517953 ~ 61540937 (+)
LOC110526236 sirt1 coding downstream 138565 61549181 ~ 61561338 (+)
LOC110526250 LOC106576834 coding downstream 150996 61561612 ~ 61571769 (+)
G67818 NA non-coding upstream 6079 61365662 ~ 61403350 (+)
G67828 NA non-coding upstream 72471 61336626 ~ 61336958 (+)
G67826 NA non-coding upstream 82281 61326786 ~ 61327148 (+)
G67821 NA non-coding upstream 87924 61321213 ~ 61321505 (+)
G67812 NA non-coding upstream 89562 61319593 ~ 61319867 (+)
G67855 NA non-coding downstream 6514 61417130 ~ 61417727 (+)
G67856 NA non-coding downstream 12659 61423275 ~ 61428564 (+)
G67897 NA non-coding downstream 101019 61511635 ~ 61511835 (+)
G67870 NA non-coding downstream 130905 61541521 ~ 61544200 (+)
G67806 LOC106581772 other upstream 94177 61314874 ~ 61315252 (+)
G66188 NA other upstream 1467365 59941486 ~ 59942064 (+)
G65442 NA other upstream 2084300 59324636 ~ 59325129 (+)
G64338 NA other upstream 2709050 58699296 ~ 58700379 (+)
G64315 NA other upstream 2743523 58665334 ~ 58665906 (+)
G67930 mcmbp other downstream 319149 61729765 ~ 61733388 (+)
G70011 NA other downstream 1864347 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 3398973 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 4505119 65915581 ~ 65922285 (+)
G73515 NA other downstream 4877063 66287679 ~ 66288469 (+)

Expression


Co-expression Network