G68478


Basic Information

Item Value
gene id G68478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62612665 ~ 62617264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU75801
TGCACAATCTATAATCGTCTACTCCTCGACCAGTGGCAGTCTATGTCCAGAAAGGCGTTCAACTGAAAAGGAGATCAACTACATTCAAAATCTCTGTTGACTCCTTGTGCATCTGGAGGACCAAGAATTGGCAGAGAAGGAAAAAAGTTGTGGCTTTCAGGAGAGGACAGTCTTGCATTTGGTGAAACCTGACTAAATAGCTTTGTGAGGTCAGCAGGATACCAAAAGTACTTGTTTTGGGATAATTCAAATATGGATTCTTACACAAACATTAAATGAGTTTTCCTGTTTTGTCAAGTACCAGTTTAATAGCACATAGTCACTGTGGCAGGAAGAGAGGCAATACAAGGCAGATCTGTGGGCAAGTCTTAACATGAGACCAGGATACTCTCAGCGTTAACCAACTTCCCCAGCCATGGTTGGCACATGCATTAGTTAAAGGCCCCTTACGGTTATCTTTTTTTACAATGAAAATTGTCAAAAAAGGAGAAAAAATGCTTCTTAGGAAAGACCAATTTCttaagcaagaatttagctaggtcTGTCTGGGAGTTGTCTGAGTGAGAAGCCTAGTTGCATGAGCCTAATGGGAGGGATCAGcaacctgaaaactagctgttattggtagaGAGGTTTGAAACACTCTGTTACTCATCGATTAAAACTTTTTGGGCGACCGACCAGACTCACATAGAAAGATGCGTTATAGATTTGTCATTCTAATTGAAAGTCTAAgtagcggtagatctgttctgtgcTACATTTCTATGCCTATCATTCTTAAGTTTCATTTCTtcgtcttttactttcagttttatACACCAGctttaaacagctgaaaataaatattttttccaAAACCAAAAGTATtgtcacagcggtttagatggcacaacaattctctacactatacttgttttgtcacaaactgaaattaggcaaagtATTAGAATTTTTACAACCAGCAAATGGCGaggcgatttctgcatagtgtacCTTTATCTTATACCGCCTGGTGATCtcgccaggcaggccaaaactccaccaAACCAGGCtcaaatttcaggcggtcttctcaaacagcctttacactaaaagggcattatcatcatctTCACAGTATTACTCCAACCCCTTAGTGTGGAAACATATATAAAACGCAGTAAATAGACCAATAAGAGTTTCAAACCTCTGTCAATAACAGCtcgttttcccctccccactcagaccactccctgacagtcctagctaaattattACTTTAGAAATTGCTATTTGATaagctatttttatttcatttttttaccattttaattgaaaacaaatcacagtaaggtacttcatttTTACCCAGAAATTACTTGAtagagataaaaacagctgcattggaccttacACAAACCCGAGTTGATGAGAAACTGATAGCTGATGTAGGCCTATATTCATCTACTTCGGATAAACAGGTAGCAAATGGAGTGAAAAGGGAACATATGGCCACATGGCCCCATAACCCACCCTCAGAAAAACGCTTTGCCACATTTCCTCTCTGTGTACAAAAGGAAAAGCTGTTAGCAATGCATTACCATAGAAGAAATTCAGCAACTTCATTAAGAACGTATTACTTACACCAAAATCTTATTTCGTGAATCCAAGTGTAAAAAAACTAATAACATATATTTGTGAATATATATACTGTGCCATGGATCAGTAAGTGAAAAATCCAGTTAACACTCAGAAGGAATATTTTAAAAAAGCCTCATCTTATGGTAGTCTGTTGCAGGAAAACTAACATTTAAATGAAAGGTCATTTACTGAacaaaacaaactaaatataTCCCCAACAGCAGTAAATGTTAAATATAGGCTGATATTTGTAATGGGAGTCTATACTGCTGCCCAGATCAACGACCACAGCCAAAAGTCTTGTTCCACTCCTCATAGAGCTCCAGGTCTTTGGCTGAGACGCTGGGCCTTACTGTCCTCAGGGCCTCCTGGAAGTCACAGTGGAGGATGGGCCGCACCTGGTCTGGGGTGATGGTGGCAATGTCACGGAGCTGGATGCTCCGGATGGGGCCAAGCGCTGCCTCCCGAAACAGCCCCAGAAAAGCCCTCTGTCCCTGTGACCACTGTCTCCAGCTCGTCCTCTCCCAGCTGGCTTTTCTCGCAGGCCATGAGGTGAGAGACTATCTGCTGTCGGGCAGCTGCCTCGGGAGGGGGATGTAGAGACGCTTGGCAAGGCGGCGCCGGGCCGCTTCGTCTATCTCCTGAGGGCGGTTGGTGGCCCCCACCACCAGGACGCGGTCGTCGGCTGAGGTGGCTGCCCCATGCAGCTGAACCAGGAACTCTGTCTTTATCCGTCGGGATGAGTTGTGCTCCCCGTCCGTACGCTGGGACAGAAGAGTCGATCTCGTCAATGAAGATAACAGCTGTCTGATGGCAGCGGACGATGGCAAAGAGTGCTCTAAccatcttctctccctcccccacccactTCGAGGTGAGAGACGAGGCACTGATGCTGAAGAAGGTGGACCACGGAGGCCAGTGAAGATGTCAGGCCGGAGCATAGGCCACACCACAATCTCCTTGATCGTGGCCTTTGCAAACTCCAGGCCAGCGATGTCGTCCCAGGCTACGGGCGGTCCATCGTCCATAATTTCACTGATGATAAGCTTGATGATATTGGGCTCAAAGTTTTTCAGATGCTCGTCTACTGGCTGAGTCTCCTGAGCATTGGTGCTACCGACAACACTCTCTTTGTCCTCTGGCCTCGACATGGGGGAcacaaatttggaaaaagtccCCCGTGGTCTGTGTGCCCCCAGTGACTTCTTCGTGGCACCCCCGATGGCAGCTGCCATCGCAGGGGGCTGCTGGGCTCTCTGGGACTGGTGGGGGTGTTTTTTCTGCTGATTAACAATAACAATCTAACTGATTGCCGTTTTGAAGTTTGTGCCACCACAGCATGGGTCTTGCCTTGCCTGTCCTCCAGATGCCCCCCCTCTGCCATTCTCTCCACCAGAGTTGTAAAACGTCTTCCTCTTGGAGGTGTTAGAGTTTAAGACAGACTGGTGACCTGCAGGGGCTGGATTTGGTTGTGGTGGAGCTGAGGAGTGCTGGCAAAACAGAGACTGAGCCCATGCTGAGGGGCCAGCAGAGGAATGGGGGTAGCTGGGGACTCCCTGAGCACCTCTTGGTCTTTCTGCTGTAGCACTATGTAAAATGCTGAAAGTGCCGTTGCCCTCAGGCTTGGGCCATGATGGGGGTCCCAATGCTTTGAATGGAGTCTCTGCAGCTTCGAGTCCAGTGGAAGGGCACTGCCTCTGTTCTCTTGTCCAACGAAGATGTTAACATCTGCAGGTGCCACAAGGGACTTTCCACCCCGTCCCAGCCCGAAGCATTTTCCGCACGCACGGCAGCTCCAGCACACCCGCAGTTGTCAGGGACGATTCCCATTTGTCGCTGTGGTTCCTCTGACTGCAGGCCAGGTTCAGTACACTCTCTGCATAGTTGTTAAGCCCCGTGCGAGGTTCTTCCGAGTCCAGCACTGCGCTCCGAGTAGGTCCTGAGCAGGCTGCCCGTGCCGGCCTGAGAGAGCTGGGCGCTCGACCATGCATATTGTATGGCAAGGATGTGCACCCGATAGGCGTCTGCCGTCTGTTCAGGTGTGCAGGTGCCAGATGAAATGTCAAAGGATCTCCTCTGCCACTCGCCCAGGTGTGCACCACTCATGCCTGGCGTGCTCCCGCACAGATAAGTAACAAACAGCTGTAGCTTGGAAAATAGAGAGCATAACCTTTTGCACCATGGAAAAGTTGTTATATCAATATCACATTCGCAGCTGGAAGTACAAAAAAATATTCCCGCGCCAACTCTGAAATCACCCCTGTTATTTTTGGGTACGTCAGGTgacctttcttcttcttcttcttcttcttcattttAAATTATT

Function

NR:

description
fidgetin-like protein 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU75801 True 3952 lncRNA 0.38 2 62612665 62617264

Neighbor

gene id symbol gene type direction distance location
LOC110526555 LOC106576807 coding upstream 4237 62585864 ~ 62608428 (+)
LOC110526548 LOC106576808 coding upstream 86363 62505171 ~ 62526302 (+)
LOC110526533 LOC106576809 coding upstream 119754 62435282 ~ 62492911 (+)
LOC118965226 cdc26 coding upstream 171534 62440764 ~ 62441131 (+)
LOC110526511 LOC100194723 coding upstream 222657 62383690 ~ 62390008 (+)
LOC110526580 LOC106576805 coding downstream 4696 62621960 ~ 62630539 (+)
polr1b polr1b coding downstream 14290 62631554 ~ 62651962 (+)
cyp1b1 cyp1b1 coding downstream 118507 62735771 ~ 62739992 (+)
LOC110526628 LOC106576800 coding downstream 246937 62864201 ~ 62874655 (+)
LOC110526643 LOC106576799 coding downstream 306725 62923989 ~ 62948072 (+)
G68477 NA non-coding upstream 2640 62609749 ~ 62610025 (+)
G68498 NA non-coding upstream 44046 62568353 ~ 62568619 (+)
G68479 NA non-coding upstream 72232 62540115 ~ 62540433 (+)
G68472 NA non-coding upstream 76724 62535608 ~ 62535941 (+)
G68469 NA non-coding upstream 80127 62532169 ~ 62532538 (+)
G68530 NA non-coding downstream 3054 62620318 ~ 62620552 (+)
G68547 NA non-coding downstream 41657 62658921 ~ 62659149 (+)
G68555 NA non-coding downstream 47868 62665132 ~ 62665475 (+)
G69461 NA non-coding downstream 200102 62817366 ~ 62877244 (+)
G67930 mcmbp other upstream 879277 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1297413 61314874 ~ 61315252 (+)
G66188 NA other upstream 2670601 59941486 ~ 59942064 (+)
G65442 NA other upstream 3287536 59324636 ~ 59325129 (+)
G64338 NA other upstream 3912286 58699296 ~ 58700379 (+)
G70011 NA other downstream 657699 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 2192325 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 3298471 65915581 ~ 65922285 (+)
G73515 NA other downstream 3670415 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 3803231 66417495 ~ 66424081 (+)

Expression


Co-expression Network