G72237


Basic Information

Item Value
gene id G72237
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64645052 ~ 64647635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU79846
tctgtctgtctgtctgtctgtctctctgtctgtctgtctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctgtctgtctctctgtctgtctctctgtctgtctctgtctgtctctctgtctgtctgtctcgctgtctgtctgtctgtctctctgtctcgctgtctgtctgtct
>TU79847
tctgtctgtctgtctgtctgtctctctgtctgtctgtctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtct
>TU79844
tttgtctgtctctctctttgtctatcttgtctgtcttgtctgtcttgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctgtctcgctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctctctgtctgtctctctctttgtctgtctctctctttgtctgtcttgtctgtcttgtctgtctgtctgtctctctgtctgtctgtctgtctgtctctctgtctgtctgtctgtctgtctgtctctctgtctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctcgctgtctgtctcgctgtctgtctcgctgtctgtctcgctgtctgtctctctgtcaatctgtctgtctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctgtctgtctgtctctctctctctgtcaatctgtctgtctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctgtctgtctctctgtctgtctgtctctctctctctctgtctctctctctgtctctctctctgtctctctgtctctctctctgtctctctc
>TU79845
tctgtctgtctgtctgtctgtctctctgtctgtctgtctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctctctgtctgtctgtctgtctctctgtctgtctctctgtctgtctctgtctgtctctctgtctgtctgtctcgctgtctgtctgtctgtctctctgtcaatctgtctgtctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctgtctgtctgtctctctctctctgtcaatctgtctgtctctctttgtctgtctctctctctctttgtctgtctctctctctctttgtctgtctctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctttgtctgtctctctctgtctgtctctctgtctgtctgtctctctctctctctgtctctctctctgtctctctctctgtctctctgtctctctctctgtctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79846 False 221 lncRNA 0.51 3 64645052 64646901
TU79847 False 235 lncRNA 0.50 2 64645080 64646901
TU79844 False 1057 lncRNA 0.48 2 64645368 64647635
TU79845 True 696 lncRNA 0.47 2 64645368 64646901

Neighbor

gene id symbol gene type direction distance location
LOC110526867 LOC100136521 coding downstream 260531 64369803 ~ 64384521 (-)
LOC110526858 LOC106604947 coding downstream 530328 64049113 ~ 64114724 (-)
LOC110526836 LOC106576780 coding downstream 664337 63694607 ~ 63980715 (-)
LOC110526802 LOC106576784 coding downstream 965839 63654551 ~ 63679213 (-)
LOC110532553 LOC106576784 coding downstream 990416 63630570 ~ 63654636 (-)
LOC110526927 LOC106576773 coding upstream 144725 64792360 ~ 64801660 (-)
LOC110526944 lrrc27 coding upstream 154757 64802392 ~ 64809629 (-)
LOC110526980 LOC106576770 coding upstream 304207 64951842 ~ 64957672 (-)
LOC118964437 NA coding upstream 415645 65063280 ~ 65064797 (-)
mcfd2 mcfd2 coding upstream 521207 65168842 ~ 65171950 (-)
G72176 NA non-coding downstream 105915 64538535 ~ 64539137 (-)
LOC110526894 LOC106605012 non-coding downstream 152343 64472402 ~ 64735581 (-)
G71450 NA non-coding downstream 202544 64441972 ~ 64442508 (-)
G71208 NA non-coding downstream 396244 64248537 ~ 64248808 (-)
G71204 LOC106585892 non-coding downstream 398679 64246145 ~ 64246373 (-)
G72292 NA non-coding upstream 75713 64723348 ~ 64723769 (-)
G72310 NA non-coding upstream 95844 64743479 ~ 64744536 (-)
G72324 LOC106576775 non-coding upstream 133766 64781401 ~ 64783733 (-)
G72429 NA non-coding upstream 291780 64939415 ~ 64939632 (-)
G72431 NA non-coding upstream 293949 64941584 ~ 64941880 (-)
G70013 NA other downstream 1367300 63277208 ~ 63277752 (-)
G69210 NA other downstream 2226756 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 2662657 61981652 ~ 61983330 (-)
G68736 NA other downstream 2958744 61682278 ~ 61686308 (-)
tjap1 tjap1 other upstream 2171209 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 2347047 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 2738874 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 3021954 67669589 ~ 67681775 (-)
sdhaf4 LOC106576700 other upstream 3510326 68157900 ~ 68162024 (-)

Expression


Co-expression Network