G77890


Basic Information

Item Value
gene id G77890
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70054553 ~ 70056523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU86103
gcttagttcaactgttgtgcGCCATCAGAACCCaatatataagcttgttttactccctTGATTCTAAatcaacactgtatagcctcaaaacatggttaaaactatcattttgatatcatgcaTGGTCAATGGTTACATTTACCAAGCTCTCAATTGCAGATTGAACCTTCCGTAGTCTAAAAATATTTGTCATTTTGTGAATTTTGCCTCTCCAGTGACATTGATTCTGATACAGCaagaaaaaacatattttttatttgttgtgACTGCATTAGTGTTACACTCTGACATTAGTGTCACCAGAGGTTTGTTTAGGCTCCATAATACAGAGGGGGGAAACACAGTTTCCTGGACGTCACCATCACAACTTCATCTAAGATACTTTATTGCTGATATCAACAGTAGCCTAGAACACATTATctgagacatactgtatattgacCCTTCATTTGGGGTATTACTGGGTTTGCCAAGTTACAAATCGACTTACATTGGACATAATTATCAATACAGATAACCATCAATACAGGTGGGTGTTTTAAAGACTTGATAACAGCAGTAATATTCTACTGATAAGGACTCCTATTTAACCTGCCATCTGGTCTCACGGCCTCCAATAGAAACCCAACAATACTGAACAATCTGTGCTGTGACCTGAAATGGCAACTTTGTGATTATTACTAAAGTAGGATAAATGAATTGTATTCAAATTATACTGTAAAAAACAATAGAGCCCTTTAATGCCAAGCTTGGTCATTACTTAATAAACAACAATAGCTTTCTTCGACATTATACAACTGATATCATGATTAAACAATTCTCGCTGCATTGTAGCCACAGTAAAAAGCAACTTTAAATCAGGTTACAGCACCTGTTGTGTTtgttgtgattggtcaaaatCTCTCGCGAATGCAATATGTTGTAAATTACATACTTGACAGGTTTATCAATCTAACCGGCTAGTTGTAACTCATCCATTTTACAATACCAATGCAGCACATTGCTATGGCACAGTAAATTGACAAGATACTGTTACAGTAGTGATAGAATTCAGACTCAGA
>TU86109
gcttagttcaactgttgtgcGCCATCAGAACCCaatatataagcttgttttactccctTGATTCTAAatcaacactgtatagcctcaaaacatggttaaaactatcattttgatatcatgcaTGGTCAATGGTTACATTTACCAAGCTCTCAATTGCAGATTGAACCTTCCGTAGTCTAAAAATATTTGTCATTTTGTGAATTTTGCCTCTCCAGTGACATTGATTCTGATACAGCaagaaaaaacatattttttatttgttgtgACTGCATTAGTGTTACACTCTGACATTAGTGTCACCAGAGGTTTGTTTAGGCTCCATAATACAGAGGGGGGAAACACAGTTTCCTGGACGTCACCATCACAACTTCATCTAAGATACTTTATTGCTGATATCAACAGTAGCCTAGAACACATTATctgagacatactgtatattgacCCTTCATTTGGGGTATTACTGGGTTTGCCAAGTTACAAATCGACTTACATTGGACATAATTATCAATACAGATAACCATCAATACAGGTGGGTGTTTTAAAGACTTGATAACAGCAGTAATATTCTACTGATAAGGACTCCTATTTAACCTGCCATCTGGTCTCACGGCCTCCAATAGAAACCCAACAATACTGAACAATCTGTGCTGTGACCTGAAATGGCAACTTTGTGATTATTACTAAAGTAGGATAAATGAATTGTATTCAAATTATACTGTAAAAAACAATAGAGCCCTTTAATGCCAAGCTTGGTCATTACTTAATAAACAACAATAGCTTTCTTCGACATTATACAACTGATATCATGATTAAACAATTCTCGCTGCATTGTAGCCACAGTAAAAAGCAACTTTAAATCAGGTTACAGCACCTGTTGTGTTtgttgtgattggtcaaaatCTCTCGCGAATGCAATATGTTGTAAATTACATACTTGACAGGTTTATCAATCTAACCGGCTAGTTGTAACTCATCCATTTTACAATACCAATGCAGCACATTGCTATGGCACAGTAAATTGACAAGATACTGTTACAGTAGTGATAGAATTCAGACTCAGAGTAGAGTCTTTTCAGTGATTGTTATTTGATAAACAACATGACTGTTTACTGGTTAACAGTTCACTTTTAACCTTCTGGTTAGATATATGACTAAAATAATTATTTGGCTGTGGTTTTGAGTCCACAAGACAATCATCACACAGAACATATACATGAAAGTgcatgtcaaactcattccgcggagggctgagtgtctgcggGTTCTTGCTTCCTCTCTTGTACTTCATTGTTTAATTAAGGCCACTGATTATAAGGAACTTCCCGCACcttgttgtctaggtcttaattaaCAGGGAAAATCAACAACCAGCAGACACTacgccctccatggaatgagtttgtcTACCTGGCATTAAAGGGTCAAACGCAATAACTGTTTATATAAGAGAAGTTGAAAAATGGAATGAAAAATGTATTCACAAACACGCCATTTCACCTATTGTTATGTGCATTAATATATTGTATGATGTGATGAGATGTTTGCGTTCTTGATACACATTCTCCAGTCTGTTAACCCCTTCTCTATGTCACGGTATTCTCCTCTGCATCACAGTGTTGCATGAATCATCGGAGGTCAGTTTAAGTCTTGCTCTATGCTAGTCTTATGACGTACTGTCAATTCAGCATTGTGATAACTTTTCTATATTTTCTATGTGAATACGGAGCGGTAGAAGTGATTGTGAAAAGGTATACATTTCTGTGGTCTCTAAATCCTATACAGTATACGGTATGTTTCAAACATTCACACAGAATTTGACTAAATCATAGCATCAGAAATGAGAGGAAGATATACACATATTTCTAGCCATAGTGATTCGAAGTCTGTGCTGTATTGGAGCTTTCTTTTCCTACACTGTGTTGTTTATACCTTTATGCATGTTCGTTTACAGAAACCCCTTGCTCAGATCga
>TU86104
AGTTACAAATCGACTTACATTGGACATAATTATCAATACAGATAACCATCAATACAGGTGGGTGTTTTAAAGACTTGATAACAGCAGTAATATTCTACTGATAAGGACTCCTATTTAACCTGCCATCTGGTCTCACGGCCTCCAATAGAAACCCAACAATACTGAACAATCTGTGCTGTGACCTGAAATGGCAACTTTGTGATTATTACTAAAGTAGGATAAATGAATTGTATTCAAATTATACTGTAAAAAACAATAGAGCCCTTTAATGCCAAGCTTGGTCATTACTTAATAAACAACAATAGCTTTCTTCGACATTATACAACTGATATCATGATTAAACAATTCTCGCTGCATTGTAGCCACAGTAAAAAGCAACTTTAAATCAGGTTACAGCACCTGTTGTGTTtgttgtgattggtcaaaatCTCTCGCGAATGCAATATGTTGTAAATTACATACTTGACAGGTTTATCAATCTAACCGGCTAGTTGTAACTCATCCATTTTACAATACCAATGCAGCACATTGCTATGGCACAGTAAATTGACAAGATACTGTTACAGTAGTGATAGAATTCAGACTCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86103 False 1061 lncRNA 0.52 1 70054553 70055613
TU86109 False 1971 lncRNA 0.37 1 70054553 70056523
TU86104 True 589 lncRNA 0.40 1 70055025 70055613

Neighbor

gene id symbol gene type direction distance location
zgc:153981 LOC106576960 coding upstream 1636 70051483 ~ 70052917 (+)
nvl LOC106576956 coding upstream 55056 69990307 ~ 69999497 (+)
si:ch211-195b21.5 LOC106576954 coding upstream 74962 69972280 ~ 69979591 (+)
fam98a fam98a coding upstream 82479 69964060 ~ 69972074 (+)
rasgrp3 LOC106576952 coding upstream 94858 69905718 ~ 69959695 (+)
LOC118966712 LOC105023263 coding downstream 65489 70122012 ~ 70122911 (+)
chchd1 chch1 coding downstream 80307 70136830 ~ 70143694 (+)
LOC110528418 LOC106576964 coding downstream 106668 70163191 ~ 70188938 (+)
zswim8 LOC100194729 coding downstream 137772 70194295 ~ 70228504 (+)
LOC110528470 LOC106576965 coding downstream 173436 70229959 ~ 70404623 (+)
G77888 NA non-coding upstream 4234 70050049 ~ 70050319 (+)
G77884 NA non-coding upstream 7586 70046698 ~ 70046967 (+)
G77880 NA non-coding upstream 12225 70042127 ~ 70042328 (+)
G77878 NA non-coding upstream 14212 70040013 ~ 70040341 (+)
G77876 NA non-coding upstream 15975 70038368 ~ 70038578 (+)
G77891 NA non-coding downstream 3696 70060219 ~ 70062882 (+)
G77895 NA non-coding downstream 11930 70068453 ~ 70068657 (+)
G77896 NA non-coding downstream 13967 70070490 ~ 70070712 (+)
G77898 NA non-coding downstream 16147 70072670 ~ 70072874 (+)
G77902 NA non-coding downstream 25657 70082180 ~ 70095616 (+)
G75747 NA other upstream 1679624 68374505 ~ 68374929 (+)
G74139 NA other upstream 3269584 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 3295569 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 3630472 66417495 ~ 66424081 (+)
G73515 NA other upstream 3766084 66287679 ~ 66288469 (+)
G78121 NA other downstream 515142 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 979947 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 3495093 73551616 ~ 73571737 (+)
G83836 NA other downstream 4852702 74909225 ~ 74909806 (+)
G83829 NA other downstream 5056137 75112660 ~ 75114190 (+)

Expression


Co-expression Network