G78209


Basic Information

Item Value
gene id G78209
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70054698 ~ 70056487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU86476
ATAAAGGTATAAACAACACAGTGTAGGAAAAGAAAGCTCCAATACAGCACAGACTTCGAATCACTATGGCTAGAAATATGTGTATATCTTCCTCTCATTTCTGATGCTATGATTTAGTCAAATTCTGTGTGAATGTTTGAAACATACCGTATACTGTATAGGATTTAGAGACCACAGAAATGTATACCTTTTCACAATCACTTCTACCGCTCCGTATTCACATAGAAAATATAGAAAAGTTATCACAATGCTGAATTGACAGTACGTCATAAGACTAGCATAGAGCAAGACTTAAACTGACCTCCGATGATTCATGCAACACTGTGATGCAGAGGAGAATACCGTGACATAGAGAAGGGGTTAACAGACTGGAGAATGTGTATCAAGAACGCAAACATCTCATCACATCATACAATATATTAATGCACATAACAATAGGTGAAATGGCGTGTTTGTGAATACATTTTTCATTCCATTTTTCAACTTCTCTTATATAAACAGTTATTGCGTTTGACCCTTTAATGCCAGGTAgacaaactcattccatggagggcgtAGTGTCTGCTGGTTGTTGATTTTCCCTGttaattaagacctagacaacaagGTGCGGGAAGTTCCTTATAATCAGTGGCCTTAATTAAACAATGAAGTACAAGAGAGGAAGCAAGAACccgcagacactcagccctccgcggaatgagtttgacatgcACTTTCATGTATATGTTCTGTGTGATGATTGTCTTGTGGACTCAAAACCACAGCCAAATAATTATTTTAGTCATATATCTAACCAGAAGGTTAAAAGTGAACTGTTAACCAGTAAACAGTCATGTTGTTTATCAAATAACAATCACTGAAAAGACTCTACTCTGAGTCTGAATTCTATCACTACTGTAACAGTATCTTGTCAATTTACTGTGCCATAGCAATGTGCTGCATTGGTATTGTAAAATGGATGAGTTACAACTAGCCGGTTAGATTGATAAACCTGTCAAGTATGTAATTTACAACATATTGCATTCGCGAGAGattttgaccaatcacaacaAACACAACAGGTGCTGTAACCTGATTTAAAGTTGCTTTTTACTGTGGCTACAATGCAGCGAGAATTGTTTAATCATGATATCAGTTGTATAATGTCGAAGAAAGCTATTGTTGTTTATTAAGTAATGACCAAGCTTGGCATTAAAGGGCTCTATTGTTTTTTACAGTATAATTTGAATACAATTCATTTATCCTACTTTAGTAATAATCACAAAGTTGCCATTTCAGGTCACAGCACAGATTGTTCAGTATTGTTGGGTTTCTATTGGAGGCCGTGAGACCAGATGGCAGGTTAAATAGGAGTCCTTATCAGTAGAATATTACTGCTGTTATCAAGTCTTTAAAACACCCACCTGTATTGATGGTTATCTGTATTGATAATTATGTCCAATGTAAGTCGATTTGTAACTTGGCAAACCCAGTAATACCCCAAATGAAGGgtcaatatacagtatgtctcagATAATGTGTTCTAGGCTACTGTTGATATCAGCAATAAAGTATCTTAGATGAAGTTGTGATGGTGACGTCCAGGAAACTGTGTTTCCCCCCTCTGTATTATGGAGCCTAAACAAACCTCTGGTGACACTAATGTCAGAGTGTAACACTAATGCAGTcacaacaaataaaaaatatgttttttcttGCTGTATCAGAATCAATGTCACTGGAGAGGCAAAATTCACAAAATGACAAATATTTTTAGACTACGGAAGGTTCAATCTGCAATTGAGAGC
>TU86477
ATAAAGGTATAAACAACACAGTGTAGGAAAAGAAAGCTCCAATACAGCACAGACTTCGAATCACTATGGCTAGAAATATGTGTATATCTTCCTCTCATTTCTGATGCTATGATTTAGTCAAATTCTGTGTGAATGTTTGAAACATACCGTATACTGTATAGGATTTAGAGACCACAGAAATGTATACCTTTTCACAATCACTTCTACCGCTCCGTATTCACATAGAAAATATAGAAAAGTTATCACAATGCTGAATTGACAGTACGTCATAAGACTAGCATAGAGCAAGACTTAAACTGACCTCCGATGATTCATGCAACACTGTGATGCAGAGGAGAATACCGTGACATAGAGAAGGGGTTAACAGACTGGAGAATGTGTATCAAGAACGCAAACATCTCATCACATCATACAATATATTAATGCACATAACAATAGGTGAAATGGCGTGTTTGTGAATACATTTTTCATTCCATTTTTCAACTTCTCTTATATAAACAGTTATTGCGTTTGACCCTTTAATGCCAGGTAgacaaactcattccatggagggcgtAGTGTCTGCTGGTTGTTGATTTTCCCTGttaattaagacctagacaacaagGTGCGGGAAGTTCCTTATAATCAGTGGCCTTAATTAAACAATGAAGTACAAGAGAGGAAGCAAGAACccgcagacactcagccctccgcggaatgagtttgacatgcACTTTCATGTATATGTTCTGTGTGATGATTGTCTTGTGGACTCAAAACCACAGCCAAATAATTATTTTAGTCATATATCTAACCAGAAGGTTAAAAGTGAACTGTTAACCAGTAAACAGTCATGTTGTTTATCAAATAACAATCACTGAAAAGACTCTACTCTGAGTCTGAATTCTATCACTACTGTAACAGTATCTTGTCAATTTACTGTGCCATAGCAATGTGCTGCATTGGTATTGTAAAATGGATGAGTTACAACTAGCCGGTTAGATTGATAAACCTGTCAAGTATGTAATTTACAACATATTGCATTCGCGAGAGattttgaccaatcacaacaAACACAACAGGTGCTGTAACCTGATTTAAAGTTGCTTTTTACTGTGGCTACAATGCAGCGAGAATTGTTTAATCATGATATCAGTTGTATAATGTCGAAGAAAGCTATTGTTGTTTATTAAGTAATGACCAAGCTTGGCATTAAAGGGCTCTATTGTTTTTTACAGTATAATTTGAATACAATTCATTTATCCTACTTTAGTAATAATCACAAAGTTGCCATTTCAGGTCACAGCACAGATTGTTCAGTATTGTTGGGTTTCTATTGGAGGCCGTGAGACCAGATGGCAGGTTAAATAGGAGTCCTTATCAGTAGAATATTACTGCTGTTATCAAGTCTTTAAAACACCCACCTGTATTGATGGTTATCTGTATTGATAATTATGTCCAATGTAAGTCGATTTGTAACTTGGCAAACCCAGTAATACCCCAAATGAAGGgtcaatatacagtatgtctcagATAATGTGTTCTAGGCTACTGTTGATATCAGCAATAAAGTATCTTAGATGAAGTTGTGATGGTGACGTCCAGGAAACTGTGTTTCCCCCCTCTGTATTATGGAGCCTAAACAAACCTCTGGTGACACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86476 False 1790 lncRNA 0.37 1 70054698 70056487
TU86477 True 1645 lncRNA 0.58 1 70054843 70056487

Neighbor

gene id symbol gene type direction distance location
LOC110528384 LOC106576958 coding downstream 18166 70030045 ~ 70036532 (-)
LOC110528376 LOC106576957 coding downstream 32295 69993128 ~ 70022403 (-)
LOC110528285 NA coding downstream 485544 69566181 ~ 69569154 (-)
exo1 exo1 coding downstream 608965 69437322 ~ 69445733 (-)
LOC118965314 NA coding downstream 622510 69421067 ~ 69432188 (-)
LOC118965320 LOC106576961 coding upstream 65 70056552 ~ 70075898 (-)
LOC118965321 LOC106576963 coding upstream 26348 70082835 ~ 70088715 (-)
LOC110528401 LOC106576963 coding upstream 39202 70095689 ~ 70111417 (-)
camk2g2 LOC106576966 coding upstream 348853 70405340 ~ 70512273 (-)
si:dkey-174i8.1 LOC106576967 coding upstream 466423 70522910 ~ 70526933 (-)
G78219 NA non-coding downstream 421 70053954 ~ 70054277 (-)
G78218 NA non-coding downstream 1504 70052584 ~ 70053194 (-)
G78217 NA non-coding downstream 3468 70051018 ~ 70051230 (-)
G77870 NA non-coding downstream 28933 70025356 ~ 70025765 (-)
G78231 NA non-coding upstream 14249 70070736 ~ 70071200 (-)
G78233 NA non-coding upstream 16587 70073074 ~ 70073276 (-)
G78237 NA non-coding upstream 23571 70080058 ~ 70080456 (-)
G78301 LOC106576964 non-coding upstream 130194 70186681 ~ 70188815 (-)
G78313 NA non-coding upstream 151081 70207568 ~ 70209802 (-)
LOC110527951 coda1 other downstream 1364469 68575379 ~ 68690343 (-)
G75682 NA other downstream 1842992 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 1892696 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 2372968 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 2666654 67386509 ~ 67389299 (-)
G78414 NA other upstream 298429 70354916 ~ 70355591 (-)
G79616 NA other upstream 1265463 71321950 ~ 71386523 (-)
G79700 NA other upstream 1413195 71469435 ~ 71470755 (-)
G79904 NA other upstream 1686558 71743045 ~ 71743809 (-)

Expression


Co-expression Network