G78301 (LOC106576964)


Basic Information

Item Value
gene id G78301
gene name LOC106576964
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70186681 ~ 70188815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU86574
GGCATACTGTctaatatttattttcaatgatggcacATTAGAAAAGGGAATTTTCCACTCCACTCACCAATAACCTTTCTAGCAGTCCATTTGAAATATTGcatatacactgaatgtacaaaacattaagaacacgttCTTTCCACGACATAGAAttaccaggtgaattcaggtgaaagctgtgatcccttattgaattcacttgttaaatccacttcaatcagtgtagatgaaggggaggagacaggttaaagaaggatttttaagtcttgaaacaattgagacatggattgtgtatgtgtgccattcctaatgtttagtatactcagtgtatatttcatCATTTTAAGCTTTCAAAATTGCACCACATCATGTTTGTGTAACTAATCTTCATCATGTACAGATTAGCATTTCAGAATTCTAGAGGAAGTATAGAAAGGAACTTTATTATGTGTCAGAATCCTGTGTGCATGTGCAAACGCAAATCACAGATGTCATATCACAAAATAATTAGTTGTGCTGTTCAGTGACAATCGAAAGCATGCAGTCATGTGACTGAAAGCCCCataaaacaaaataatatttGGATGTTAAATTGTAAAAGAACATTCCATCAAGTGTACAGGTGGTATTAGGAAGTAGTTAGATCTATTTACTATCGGGATAGATTAGAGTACTAAACCAGAGGTTCTTCTAAACAGCCAGATAGTTTAGAAGTTTGCATTAGTAATTACCACATGAAGCTTAGGGGTATTGAGCATGTGTGGTTCCATTTCTAGACATCTATTCAGTAGCAGAGTGGAATGTGACCAGGTAAAACATAGAACAAATGCAACGTCAGCACTGTGTAGGCTATGTAAGTCTGTACGATGTGTTCATGTGTGTCAATAAATTATAAGAATGATGAGAAGATTGCATTGATCATTTGGCAATTGCACTGCAACTTGAGACAAAAACACAAAGATATGGTCTAAGGCCTGAATTGAGATGCTGTATGAACCATTCATTGAcagtgcacacacacacacacccacacacacacaatgattgtCTTACAGTACAAAGAGTGGATAAACAAAGATAGTGGATCTGTCCCAGGACTGGCTTCACATAACACTGATAATAGGGATGTGCAGCTTCTAAGAAAAAGTGGTAGACAGATAGATACTGTGGGTaggcaggcaaacaggcaggACCTCATTTAAGTCATTGTGAGTAGCCATGTCATCATTGCCACGTGTACAGAGCCTCGTAAAGGCCCACTCATGCCTCTCCTATGGTCTAAACCAGCGATCTGTACACTGACTAATTTGACCAATTGTTTCAATCAAGAGTGGAGCACATTAGTGTAGGCATAAGTTAAAATGCATGAACAACTGGAATGTTCATGAAACCATATTCATTTAAAAGCCACATGTCTGTATGTACTTTACATATACAATCTTGTACCTTAAAGATATTCCACCTAACGCTCCTGACTAGACTTACTCCCAATGGCTCCATTAATTGGCCATTCACAGGTGTTGCAGGGTGATAGTATGGCATGCATTATAGTGCAATGTCATTCACCTATGCAGTCTGGCTTTCTGGTGCATTAAATGCTCTCGTTAAAGTGGTAATTCCACATAATCAAGAATGCTCAATGCCATTTACAGGCTTCTCCAAGTGTAGGCAAAAAAATGACTCAAAAGCACTCTGCTGGATGTGGGTGAGACCAGGAGCAGATATCAGGGTGTGGTATAGCCTCTCTAACCGGCCACTGCTCCTTTAatctccccacctccccctcaaCCCCAAATTCATGTGATAACACTGGCTGTCCAATGGCACGGTGGCAGCATCAGATTTTCGGTGGGTTGTTGGTGACCTGGTCAATCCAGCGCAGGAACCTGCTGACCCGTGTGTACACCCCGGGGAAGGAGGGGTCACCACAGCCATGACCCCAGGAGATGATCCCCGTCAGCACCCAGCGCCCACCCTCCCCCTGACATACTAGGGGACCACCACTGTCACCCTGGCAACTGTCCACGCGCCGTCTGTCCGAAAGGCTGCCCGCACACAGCATGCGGCTGGTGTAGCGCTCGCCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86574 True 2087 lncRNA 0.43 2 70186681 70188815

Neighbor

gene id symbol gene type direction distance location
LOC110528401 LOC106576963 coding downstream 75264 70095689 ~ 70111417 (-)
LOC118965321 LOC106576963 coding downstream 97966 70082835 ~ 70088715 (-)
LOC118965320 LOC106576961 coding downstream 110783 70056552 ~ 70075898 (-)
LOC110528384 LOC106576958 coding downstream 150149 70030045 ~ 70036532 (-)
LOC110528376 LOC106576957 coding downstream 164278 69993128 ~ 70022403 (-)
camk2g2 LOC106576966 coding upstream 216525 70405340 ~ 70512273 (-)
si:dkey-174i8.1 LOC106576967 coding upstream 334095 70522910 ~ 70526933 (-)
cgas mb21d1 coding upstream 522059 70710874 ~ 70713631 (-)
eef1a1a LOC106576970 coding upstream 525808 70714623 ~ 70729159 (-)
slc17a5 slc17a5 coding upstream 545040 70733855 ~ 70745693 (-)
G78237 NA non-coding downstream 106225 70080058 ~ 70080456 (-)
G78233 NA non-coding downstream 113405 70073074 ~ 70073276 (-)
G78231 NA non-coding downstream 115481 70070736 ~ 70071200 (-)
G78209 NA non-coding downstream 130194 70054698 ~ 70056487 (-)
G78219 NA non-coding downstream 132404 70053954 ~ 70054277 (-)
G78313 NA non-coding upstream 18753 70207568 ~ 70209802 (-)
G78318 NA non-coding upstream 44731 70233546 ~ 70233762 (-)
G78321 NA non-coding upstream 49530 70238345 ~ 70238672 (-)
G78322 NA non-coding upstream 52084 70240899 ~ 70241162 (-)
G78323 NA non-coding upstream 52781 70241596 ~ 70241815 (-)
LOC110527951 coda1 other downstream 1496452 68575379 ~ 68690343 (-)
G75682 NA other downstream 1974975 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 2024679 68157900 ~ 68162024 (-)
LOC110527687 sncg other downstream 2504951 67669589 ~ 67681775 (-)
G78414 NA other upstream 166101 70354916 ~ 70355591 (-)
G79616 NA other upstream 1133135 71321950 ~ 71386523 (-)
G79700 NA other upstream 1280867 71469435 ~ 71470755 (-)
G79904 NA other upstream 1554230 71743045 ~ 71743809 (-)
G80957 NA other upstream 2019114 72207929 ~ 72211089 (-)

Expression


Co-expression Network