G78558


Basic Information

Item Value
gene id G78558
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70646124 ~ 70653964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU86845
gttttatatctttatgtttgaagcctgaaatgtggcaaaagatcgcaaagttcaagggggccgaatactttcgcaaggcactgtagatgggtGGGAGATGCAGACAGCCTCTACCTGAGACACACCCTAACCCCTGCCGTGACAACAAGAGAAGCATGCAATGCTGTGAACCAATCAGATGGAGTGACAGCAGACCCAATGGTCAGGCTTGATTCTTCAGGCACCAATGATCAGTGAGCAAACTCCCAGTTTCTGTGGAAAATTCAGGAGGGAATATTGTGCTCCAGTAACCATTAGGAAGTTATTCATGATAACAGGGACCTTGCCCAAGCCTAGGTAAAGGAAGATGCATCAATGCCGTGTGGGATGAGTGAGGTCAAAGGTCAGTCGGGGTGGTGGTGACAATTTTTTATGAGGACATGCAGTGGCACCATGCAACTAAGCCAAGAGACCTCAGCAGACAAATGGAGGTCTAGATAGACTGTAGATTTTATGGCGATAAAATACTTTGTTAAGAGTTCTGATTTCTACACACAGAACTTCTTCTGCTATATAAGGGGACCGGGATACAGTTATTTAGGGGTTGTGTCTGATAAGGGGGTCCAAGGGAGGTGGGGGTCGAAACCAACAGGCAACATGTAACAGGCAGCAGTCCCATTAGACAAGCAAAAGGCTAATACAATTATTTCATGGGGAGGGGGTAGGTGGCAGTTTTGGGGTTCTCTCATCATCCTCCATGCACCTGGCAGTTAGTCAGCATTCCCAGAGATCATGTGACCAGGGAGGAGTGGATGCTGGGTAGTGGGTACTTCCTAAATGTCTGTGCGTAATACCTTCTGAAGCGCCTCCTATTACTATGACCCTtactagggaggtagggaggaagaCAGATAGAGGAGGAAGGGGTTAAAACACCAAGGAGTGGGGAAGGGAGGGACGAGAGACATCTGTACGGTCAATACTGTCAGAAGCAGCGGAGGTTGCTGAGGGGAGAACAGTcattaataatggctggaacagagtaaatggaatggcatcaaacacctggaaaccatgtgtttaatgtattggataccattccactgattctgctccagtcGTTACctcgagcccgttctccccaattaaggtgccaccaacctcctgtggtcagAACTGTAAACTGCCGATTATACAGTATATCTCGCATTCTATGGTCTGATTATATACAGTAGCTCACACACCTTTAGCTGTAGGAGTTGCAATACAAACCATGAGAGTCATTTATGGTGGTTGTGTCCTTACATTCTAGATAGTCAGAAGTCAGAAGTTGTGAAAAGAGCAAAATAAGCAGACACACCACAATTCTCATACTCTCACACATATAAACagaccacacacacacacacacacacagtgtttagATTTTTAGTGCCTGTTGAGTATATACAGTAAGTCAGTTTTACCAGACTAATTTGCTACTGTAAAGCAATTATAACATTACCTAAGTTCTCAACCGTTGATGTGAGCGATGCTTAGGAAAAATCCTATTATACAGCTAATTGTATTGTATACATTTTAGGGTATGAAAAGCTGGGCTATAATTATGATTTCAAAAGCTCTCGCCTAATTGACTAAACCACAACACAAGTTACTTGAGAAGCCAATGAAAGCATACAAAACCTCATGACTTCTAACAGCTTGGAGGATTAGCAGGGAATGAcatgtttggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgcgcgtgcatgtgtgtgcgtgtgtgtgtgcctacgcaTGTGCTGTGCATATGTCTCTCAACATAAAGTCCAAATTTAGCTGCATTGGCATGACACGAGGAATCCACCGTTGCTAAAGGAGCCCTGTATTGTAAAAACAATAACCTGAAATCATACTTAAAGTTAcagatctctctgtctctccctcctcctctccttgtctctcggCCTGCCGACCGAGACTGGTGTTTGACAAGTTAAATAAATACCCTTGGAATGGAAAACGCGCGTCATGGTGCAGACATGGTACAGACGCTGGTTTGCACATAACACACACATAtcgtagaaacacacacacacacacacacacacacacacacacacacacacacacactaagcaaAGAATCACACTCAGATACTCTCTCAAACacagcagagacagagaaaagtgGTACTCCAGTCATGGTGGCTCGGAAAGCCAGGAGCCAAGAGAGACCATGGTGCTCTGAGAGACATAGGCTGCTACACTAGAGAGCCATTTCTCAAACCAGGATGGTGACTTTCATAGCACTGTTGTTCCCCTCTGACCAGGGACTGATTCTGaccagggacaccaggtgagtgcaaGCTCTGGCCAAACAGTGACTTTCAAAACAATTTGAAAACAAGGGTTGTTTCAACACGTTTATCAACCAGCATAGGTCTTCTTTTTAGAGTGAATGTGTTTGAATGAACCATTGCGTGATGTGTGTAGAGGCGAGAGCTACAAACCTGCTAATCGTCTCACCCTGTTCTTTCCTTTAGGTGTtagtgagaagagaggagagagacaagagagagattTCAGTCGAGACAAGAAGAGATATCAGTCGTTAATGACAGAGTCTACAGGGTCTCCCTAcaccacacacagggacagagagatgaagaAGTCAGCCAGCTtcatactgtaacatcctccctGTGTGTATCGCATGCGAGACATGATGTCAGAAGACAAACCGCCAGGCATAAAGAACATGAACCACTACAGTCAAAGCCTTGTGCAAGACCAATTTTGTCAACTAGTTTACAGAACATTGCAGCAGGCACACATGCAAGCAATAGCTGTGCCACTCAACTGGGCTCGGAAAACACCGGAAGACAGAGATAGAAGATAGAAAGGTGTGTAATccctgggcaaaaactggttaaatcaatgtTGTTTGCACGTCATTTCATCCCACAAATGATATGTGATGACATTGCATTAATGTGGATATTGGTGatattttgtgtttatttcacGTTGacttcacattagttgacaactcaaccaaaggTAATTCAAagctagacgttgaactgacttctgtgcccagtggggtgtGTATTTGTGATTGAAAAAGCAGATGTTTGTGTTTGCGCCCACTCTGGACGTAGACCTAtagggtgtgtatgtgtatgtttgcgtgagaaagagcgagcgagcgaTAAAGCAGGTCGTCCTGTGAATATTTCCAGGATACGCTCATGTGCCCTTAAACACACCCTAAAGTCTACAGAGAAAACATGGATGTCATTTCTGGACAACATAAGAGTGTTTGTACACTCTGTTATACTTTCAATGTTTAAATGAATTAACTGAAAGCAAGGTATTTGTAAGTTGGTTCTTTGTGGGTGGGCACCTGGAAATATTGGAATATTTAATGACTGTGGGCCTTAAAAAGAAAGTCACATATGAAAGTATTGTAACCATACAAGTATCAAATTATAATAACAGCAAAATAAGTATAGGAAGGAATGTTAAAAGGAGTTAACGAGCTGATTAAAACTCAAGTAGGGAGAAATATCCACAAGAGACCAACCGCTAAAAAAAACTAGAGGAGCACAGAGACCAAATAGGAGCAGAGCAGCAGCCATACTTTAGGTGTTACCTACTTTGCAGGACTGCAGGTATGCAACGCCTTCAAATGAGGCTTCCAGGTAGCTATGGAAACCGAGTTCTCATCAGCAGCATAACTACGCCAGACACACTACGTGCAGAGTCAAcagaaaacaaaagaaaaacagagagagagagagagagagagagagagagagagagagagagagagaggggggagggagggagggagggagaacggggggataatacaaaataaaacaagGCCAGAGGGAacggaggagggaggaagggggattggggtaagaaagaaagagaaataaaACAAAGAGAGTGATTAGTAAAACCGGTGGTGTCAAGGCATCATGGGGCGGAGGGAGGGGGGATACATGCCTGAAGGGGGAGTGGGCGCCCTGGTAGTGCTGCCACGTGGCACTGAGGTAGGTACGGGCACCGTCGGTGGAGTAGAGACGCCAAGCAGCCTGGGATATGAGGTGACACGCATAGAGAGACATACATAGACGGGAGCAATGGCAACATGGTGAGGAGCTAGGGTACACGTAATCATACACACACGAATAGAGGTGcacaacacatacacagacagacacacataccaagagtgtacaaaacattaagaacacctgcttttcCACATGTATTCAactggtgaatccaggtgaaagctatgatcccttattgatgtcacttgttaaatctaacttcaatcagtgtcgatgaaTGGGAGGGGACAGTTTAGcagaggatttttaagccttgacacaattgagacatggattgtgtatgtgtgccactcaggctgaatgggcaagatatttaagtgcctttgaacggggtgtggTAGACGCACCAGTTTGTGATGAGAACTGCATCGCTGCTGGATGTTTCAcggtcaacagtttcctgtgtgtatcaagaatggtccaccacccaaaggacatccagccaacttgacacaactgtgggaagcatcggagtcaatatgggccagcatctctgtggaacgcttttgccATATTGGTCCATGCTTcgaggctgttttgagggcaaaagggggggggaaggtgttcctaatgttttgtacacagtgtagaTACAAAGCGAAAGACCAGGGGCTAACAAACAACAGAGATAACACATTCCTGCCGACTGCAGATGTAAGTCCATCTGTCGAGAGAAAATATCTGGTCAGATGAAGAAGTGTTGAAGTCCTTATCAACTCAGCCATACTATACAGAAATGATGAATAGAGCAAATGGAGTTGCCTGTTTGCGGGCCTTAAAGCGGTGGAACAGGGGAGCTAAATTGAATACATGAATCAAACGAGTAGCCTAATCGTTTTTTTTTCTGCTTGATGTTAAAATCTCTTGAGAAACAagatctgtgtgtgttttgtgtgtgttttgtgtgtgtttttgagttCATTGTGTATGTTGCGTTGATGGGGTATTGTAATAGTCCAGGTCTAGTCTGATAGGATGAGCTATTGCGTAGAGGGAAATCCACCCTGGGCTCTAGTGGAAACAGCTCATAAATATCACCTCTGTATTTCCTTTGGACCTGAGAGAGGACAAAGAGTCTCAGCCACGATTAGGTATCgactacacacactaacacacacacgtgcatgtttctacacacacacatacacatacagtaccagtcagaagtttggacacagctactcattcaagggtttttcttattttttactattttcttcattggagaataatagtgaagacatcaaaactatgacataacacatatggaaacatgtggtaaccaaaaaagtgttaaacaaatcaaaaacgattttatatttgagattcttcaaagtagccagcctttgccttgatgacagctttgcacattcttggcattctctcaaccagcttcatgaggttgtcacctggaatgcatttcaattaacatgtgtgccttgttaaaagttcatttgtggaattgatttccttcttTATGCATTTGAGCCATTCAGTTGAGTTGTGACAAGGAGTGGTATGCAGAAGACAACCCTATATGgtaaagctgtaatcaaggcaaggggtggctactttgaagaatctcaaatataaaatgtattttaatttgtttaacacctttttggttactacatgattccatatgtgttcattcatagttttgatgtcttcactattattattgattggtactgtatatGGTTTTTcatgcatttgataccattccattcactccaatCCTTCCACCATTATCAGCCTTCCTTCCCTCACCAGCCTCCAATGGAACAGTTATAGCATGTCTGGTGATACACTTGTtagtgtgtgttgtgtacctgGATGAGGCTGGCTGCTGGGTTCCTCCTCTTCTCAAAGTGTTTTTGTCTGTGCTGCTCCTGTACCTTCAGGGCAAAGCCTGAGCCCAGGATaccctgtacacacacatacacacgatgGACTGAATCTGTGGGTCTTGACACCGCGTTTGGTGAATTAActtcaaactgtgtgtgtgtgtctgtgtctgtgtggttgtctGTGTCTCACGGCAGGCAGGGCGAAGAAGGAGATCCCCATCAGAGCAAAGCCAGCTGAGATCAGACGACCCGTCCACGTCTGAGGAGTCTTGTCTCCGTAGCCGATGGTTGTCAGAGTGATCtagacacacacatcatcatcacagAGTTCAGAAGTCACAATACAATAGTTACACTGTACCTCCCACAGCCCCACAAGATGCACAGAAAAACTGAATTATCCACCATTACTCTAGGCCAGTGTTTCCCAAATGTCATTTTGTAGTATTTAGGTAAATTCCATTTTCAAATCAGTCAATTCCTTCCTGAATAGAAATATCCACCCTGTAGAGCCCTCCGGGACTAGGTTTGAATAACACTGCTTTTGTGTGTTGTGTATTTCAGTgacctcctttctctccctgtccctgtctccccTTGCACATCTAATAGCCCATTATCCCCTGACAGACACTGTAAATTACATTAATTGATTGGGTAATTTTAGCAGGTCCGAAGCAGTGGGCATTCATTGTTTGTGTCGACATTGTATAAAGTCTGGTAAATAGTGCCTGGGAAAGGGAACGGGAGGTGTTTGAAGACCAGCCAAGCATGACCTGTTATGCCACATGGTTTTTTACAACACATTTTTTTGTAAATGTGATGGTAAGGGtcccagatttttttttttaaagcgatTTCACTTGTTTTGGGAAACTTACCCCAACTTACCCTAAACTTACCCCAACCATTAATTTCCTCATCCTCGTTGTGCAGTACGTGGTCTCTGAAAATGGGGTCTCTGAAAAAACATGCACGAATGCTTGAAAAACAACCAAATATGTCCTTTTAGAAACCGAAACGCTgtcagtatagtgatgcaggtctttagcTGTTGTAtacatgaaattgtgtcattccgAAATGTATCCGCAACATTATTCAATTTTGTGAGACTCAAGACGTTTTCCCATATCCAGCTGTTCCATTCGCCGTGAAGCCTGTTgccacaggtaactgccaaaataaaggaaacaccaacataaagtgtcttaatagggtgttgggtcCCCAtgagccaccagaacagcttcaatgagccttggcatagattctacaagtgtctggaacttcctgtgtggaagcacctgctttcaatatactttgtatccctcactTACTCGTGTttcttttattttggcagttacatgcaGAACGACAGACCGGTATCTCTCAagtcacaacacaatgcaataTAATGTTGCAGATAAAGTTCAGAATtacacaatttcatgtgtacaactTATAAAGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86845 True 7511 lncRNA 0.44 4 70646124 70653964

Neighbor

gene id symbol gene type direction distance location
si:dkey-174i8.1 LOC106576967 coding downstream 119191 70522910 ~ 70526933 (-)
camk2g2 LOC106576966 coding downstream 133851 70405340 ~ 70512273 (-)
LOC110528401 LOC106576963 coding downstream 534707 70095689 ~ 70111417 (-)
LOC118965321 LOC106576963 coding downstream 557409 70082835 ~ 70088715 (-)
LOC118965320 LOC106576961 coding downstream 570226 70056552 ~ 70075898 (-)
cgas mb21d1 coding upstream 56910 70710874 ~ 70713631 (-)
eef1a1a LOC106576970 coding upstream 60659 70714623 ~ 70729159 (-)
slc17a5 slc17a5 coding upstream 79891 70733855 ~ 70745693 (-)
LOC110521978 LOC106576971 coding upstream 106771 70760735 ~ 70766495 (-)
LOC118966765 NA coding upstream 111387 70765351 ~ 70765482 (-)
G78419 NA non-coding downstream 287402 70358503 ~ 70358722 (-)
G78415 NA non-coding downstream 289637 70356274 ~ 70356487 (-)
G78412 NA non-coding downstream 292253 70353429 ~ 70353871 (-)
G78409 NA non-coding downstream 298021 70347584 ~ 70348103 (-)
G78389 NA non-coding downstream 322556 70322921 ~ 70323568 (-)
G78807 NA non-coding upstream 78387 70732351 ~ 70743072 (-)
G78855 NA non-coding upstream 169177 70823141 ~ 70877036 (-)
G78874 NA non-coding upstream 194732 70848696 ~ 70849537 (-)
G78910 NA non-coding upstream 246851 70900815 ~ 70902212 (-)
G78995 NA non-coding upstream 348353 71002317 ~ 71002542 (-)
G78414 NA other downstream 290533 70354916 ~ 70355591 (-)
LOC110527951 coda1 other downstream 1955895 68575379 ~ 68690343 (-)
G75682 NA other downstream 2434418 68210180 ~ 68211706 (-)
sdhaf4 LOC106576700 other downstream 2484122 68157900 ~ 68162024 (-)
G79616 NA other upstream 667986 71321950 ~ 71386523 (-)
G79700 NA other upstream 815718 71469435 ~ 71470755 (-)
G79904 NA other upstream 1089081 71743045 ~ 71743809 (-)
G80957 NA other upstream 1553965 72207929 ~ 72211089 (-)
LOC110528794 LOC106576993 other upstream 1594640 72202814 ~ 72251918 (-)

Expression


Co-expression Network