G78728


Basic Information

Item Value
gene id G78728
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 70862684 ~ 70866754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU87040
TCAAGTAGAAAAATTATtctaaacatctgaaacattAGAACACAAAGTAAACCATTCTGTCTAGATCTCCCTGTTCAGGAGGCATACCTTGGGCCATTTGATTAACATTACGTCATTAAACTCAGCAATCCTATCAGCAACAATGCAGTCATCTAGGAAATTCAGTTTAACAGCTGCGTCTAATCCatctttaatatatatatatatatatatatatatatatatacagtaccagtcaaaagttttgacacacctactcattcaagggtttctctacattccagatgactacctcatgaagctggttgagagaatgccaagactgtgcaaaactgccatcaaggcaaagggtggttactttgaagaatctcaaatacaaaatatattttgatttgtttaactcttttttttttggttactacatgattccatatgtgttatttcatagttttgatgtcttcacttttattctacaatgtagaaaatagtaaaaataaagaaaaaccctggaatgagtaggtgtgtccaaacttgactggtactgtatataactatgaTTCAATTACATTATAATTACCAtaaataatgtattatattaaaataTATCCATGCGAGTTAACAAAGGATACAGTGATATCAATAAAATCTCAACCACAAAACAAGGACTAAGGAGGGCAACAAGGGGGACGTAGGATCACATCTATGAAAATATATTCGACAGATAGGTTGactaaatatataaatacatttacatgTATGTATATCTATGTACATCAGCAATATATCACCCTGTTTATATCACCAATTATTAAAATATTCATTTCTTCAAGACACTCATATCTGCAGATGAGCTCTTGGCAATAGTTTGGTTAATTTCGAGCACATGATCGTATAGTATATGTTTTTAGAACATAATCCTCAAACGTACTGTAGAAGCTGTAATACAGGGATAAATTAACAGCAACACATGACATCTGACCATATTGTCCCATGCTATTATGGTCAATGATGAACTTGTCACTGGTTAACATTTCAGTTACAATAGATGTGCCACTGAATatagttttttttctcctctcaaCATAAATACCTGTATATTGAATGCTGCATGGGGATATTTGTAtgatatttgcaaaaaaaaaagagagtTGGGAGCCTTTAACTTATAGGCTGGTAGATGTTTAGATAAGTCCCATTTTCATTACAAGCTTCCAGTGCAGATTTCTGTAAACCATTTAGCCTTAGTCTGTCCTACAAGAAAGATGTTCCTCTATTGACAGATAGATGTGCTACTGTGTACGTGTATGTACCATCTAGAAAACTGTCTTATGTGCCTTCAAACAAACAACATATTTACATTGTAAAGCTCATAATTATTGCATTATAAATCATTTGACATTTTAATGATAAACCCTGTTTTCCTTTGACACTAGAGTTGTGCTCTGTCTATTCTAATCTCCCGAGGAAAATATGATAAATATGATatgaacaaaaacaaacaaacatcctttaaaaacaaatgCAACCCTAAGACTTTGTACATTCTGAGACTTTTTTCTCCGTTATAACTTATGCATTTGAGATGTTGTGCTATTGGTCCATGAAATTAGTGTTCACAAGATAGGTCATTCAGAGTTTGTAAAACAACGTTTTTCTTCTCCAATAAATGTGTTATTTGCATTTATGAAATAAACCCACCAGGTGAAACATCAAGATTTGACCAGTGTTTTAACAGTGTTCCCCTGCTTtcaggagaggatagagagagaaatataatACTTTCTGTAGGGCCAATGTAattatggtgctttgctggttggCTTGCCTTGGGCAACAGTCTCTCAGAATCCCCTGTAGGTTGACAGAGGATGTCTGATATATTCCCTTTAAACTAAAGGCGCAAAGGACATAAGCAGTGATTTAAATGTACCACAACCTCTAAACATTGTGCATTACAAAACACACATTACCACAGCCCAACCAACACCAGGTCAGGTCAAAGTTCAGATGCTTTATTCAAAGTGCATCCCTACCATAGAGATAGATCGAGGACTAATCTTTGTATATGTGCCATTATAGCATCTGTGACAACATGAGCGCATCTCCTTGTTtaagtagtacattttcttcttcaggattggctgtcccacccagttgactatattgtaatggtggaagccctcaatggcgctgcccatgctaatatgactttttggccactagaggcctttGTCATTCTCAATGATCTCTACTCCTATGAATAATATCACTAGGAGTAATTAGTACAGATACGCCTCATTTCCTCTGTGTGCCACCCTTTAAACAGGAAGTCCTTCCAGGCAATGTACATTTGGTAAAAGTTACTTTGAATAGGACAAAGTCTGTAGGAATCCAATAGTGTGCTGTTGTTCATGGTTGTGCCCCTAGGTAGCAGCACATCTCATTCTCTTGAGCTACATGAGTGGAAAAAAAGGAGTTCACTGTTTTTCACAATCGCTTGCTTCATTTTACCAGGAGATTGTCCTAACAATCAGCAAGTAGGGACACTCATGGCCATTgaaacagagtctcccaccttgGATAGGTACCACATATAATATACCTCAGTGTAAATAAATTCTCACTAAAGAGGTTTGACTTGCTAAGGAGCAATACATTTTCTTCCATAAATTGTTACCATCTCAATCAAGTCCATCATAAAGTAAATGTTCAGAATAACTTAAGTAGAAATTCCTCTCTTGCAAGAGTCAAAAGAGTGTTGAAAGGATGTTTTTCCtaaaagtgacttttgacttgAGTCTCACAACATGCCAAGGAGTATTGGTGTCACTAAGCTCTGCAGACAGTATCTCCAAAATGAACTAATCTTTGAGACCAATATGGGTTGGTTTGGATTTAAAatgcagaccccccccccccccccccccccctccaaataTGCATAAATAATGTTCAATaagttaataaataaaatatctgTCGTCTGGGTGTATTTACAAAGGGTAAAAATGTACAAAACCCCTAATTCAACACATTTCATTATCTTTTAGAGATACCTTTCACTTTCCAACAGTATAGCATATCTGACCTCATATTGCTGTTGCCTATTCCAGCCAAATGCACTCCATTTATCCTGTCCTCTCCTGAAATCGACTCTATACATTAAATCAAAAGGGACAGAATCAATAAAAGCTGCTTAAGCGATGTTGAAAAAGTATCTTTGTGTACATACTGCTGCTCAacaacagtgtctgtgtgtgtgtgtgtagattgggggGGGGTAATGCCCACAGATCATGATGAGAAGTCTGGGGTGTCATCCAGCTAAATGTCCTCTGTCAACTATTTACATCAAGTCACCTGGCACTTTCACCTTAAATGATTTCCATTGACATGATCAACCATAAAAATCATTGCTAATATTGTTCAAAGAACAACACTATTCCAGTAGACTATCAATTTTCTTCAGGCCGGCTATCCTCTAAGCCAGTTAGCAGCTATTAAACACATTACATTATAAAATATAATCAAGATCACACTGAAGAATATAACGCAGTTTCAATCACCTTTACAAAAAAAATCCCAAACAAAAACAATCTTCACATCAAAGCAGGCAGTAGTCGACAAAAATAGCTTTGTTCACGAGTCCTCGTGAGAGCTTTTTACAAGTCAGTTTGTGCTCCCGCATGTGTGTGCCCAATCATCTCCTCTCCTGTTTAAAAACAACCCCACACACCAGGGCTGCTCCATATTACACTGACCATAAAGAAAAGAGACGAAATTCAAAAACGAATGCTTTGAATAATACAAAAAAAGATCTGAGccgcagacagacagggggcgacagagaggagagagaagcaaGCCTCAGCGGTCTCTGCAGGTGGGCAGGTTGACGAAAGTGAAGATGTTGTACTCTATGAGGATGGAGAAGCAGAGAAAGATGGAGTACATGAACAGACACACCAGGCCCAGACGACGGTCCAGTTTCCACCCGT

Function

NR:

description
sodium/potassium/calcium exchanger 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87040 True 3998 lncRNA 0.37 2 70862684 70866754

Neighbor

gene id symbol gene type direction distance location
ddx43 ddx43 coding upstream 151206 70679883 ~ 70711478 (+)
kcnq5a LOC106576968 coding upstream 185493 70555702 ~ 70677281 (+)
LOC110528470 LOC106576965 coding upstream 458061 70229959 ~ 70404623 (+)
zswim8 LOC100194729 coding upstream 634180 70194295 ~ 70228504 (+)
LOC110528418 LOC106576964 coding upstream 673746 70163191 ~ 70188938 (+)
ccdc85a ccdc85a coding downstream 169686 71036440 ~ 71076239 (+)
vrk2 LOC106576978 coding downstream 381348 71248102 ~ 71266030 (+)
LOC110528637 NA coding downstream 413707 71280461 ~ 71323276 (+)
asrgl1 LOC106576984 coding downstream 1098036 71964790 ~ 71978789 (+)
LOC110528701 LOC106576988 coding downstream 1141753 72008507 ~ 72040224 (+)
G78666 LOC106576973 non-coding upstream 88371 70772095 ~ 70774313 (+)
G78649 NA non-coding upstream 113122 70749172 ~ 70749562 (+)
G78198 NA non-coding upstream 135894 70715526 ~ 70726790 (+)
G78120 NA non-coding upstream 181319 70571504 ~ 70681365 (+)
G78992 NA non-coding downstream 134073 71000827 ~ 71001055 (+)
G78996 NA non-coding downstream 136447 71003201 ~ 71003514 (+)
G79008 NA non-coding downstream 148517 71015271 ~ 71015619 (+)
G79014 NA non-coding downstream 153729 71020483 ~ 71021967 (+)
G79020 NA non-coding downstream 159554 71026308 ~ 71026520 (+)
G78121 NA other upstream 207723 70571665 ~ 70654961 (+)
G75747 NA other upstream 2487755 68374505 ~ 68374929 (+)
G74139 NA other upstream 4077715 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 4103700 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 4438603 66417495 ~ 66424081 (+)
G82111 LOC106577091 other downstream 2684862 73551616 ~ 73571737 (+)
G83836 NA other downstream 4042471 74909225 ~ 74909806 (+)
G83829 NA other downstream 4245906 75112660 ~ 75114190 (+)
G83979 NA other downstream 4278110 75144864 ~ 75145512 (+)

Expression


Co-expression Network