Fish Transcriptome and Expression Database

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model fish

XLOC_002029 (dre-mir-130c-1)

Basic Information

Item	Value
gene id	XLOC_002029
gene name	dre-mir-130c-1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	17453363 ~ 17453503 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003939
GGGAGAGGTCTGTACGGTGATATTGACCATGTTTTGTCCATTGCCCTTTTTCTGTTGTACTACTGGCCAATCAGAAGAGCAGTGCAATATTAAAAGGGCATTGGCTGATAGAACAGAGTCCTTCACCTCTCACCCTCTCCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000082394

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00003939	True	141	miRNA	0.46	1	17453363	17453503

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_002028	NA	coding	upstream	4324	17442234 ~ 17449039 (+)
XLOC_002027	NA	coding	upstream	14879	17438158 ~ 17438484 (+)
XLOC_002023	NA	coding	upstream	19485	17235277 ~ 17433878 (+)
XLOC_002030	dre-mir-301c	coding	downstream	987	17454490 ~ 17454572 (+)
XLOC_002031	NA	coding	downstream	6154	17459657 ~ 17497772 (+)
XLOC_002032	NA	coding	downstream	129878	17583381 ~ 17587877 (+)
XLOC_002033	kcnn2	coding	downstream	138770	17592273 ~ 17674345 (+)
XLOC_002034	drg1	coding	downstream	227571	17681074 ~ 17691171 (+)
XLOC_002035	dre-mir-218b	non-coding	downstream	241762	17695265 ~ 17695340 (+)
XLOC_002040	BX927277.1	non-coding	downstream	436586	17890089 ~ 17890203 (+)

Expression

Co-expression Network