G79880


Basic Information

Item Value
gene id G79880
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71724943 ~ 71725247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU88279
gtagtagaagtacaaatgcaagtagtagtagtagtagtactagtggtagtagtagtagtagtagtagtagaagtacaaatacaagtagtagtagtagcagtggtagtagtagtagtagtagtagtggtagtagtagtagaagtacaaatacaagtagtagtagtagtagtagcagtagtagtagtagcagtagtagtggtggtagtagtagtagaagtacaaatacaagtagtagtagtagtagtagtagtagtagtagtagtagtggtagtagtagtagaagtacaaatacaagtagtactact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88279 True 305 lncRNA 0.35 1 71724943 71725247

Neighbor

gene id symbol gene type direction distance location
LOC110528637 NA coding upstream 401667 71280461 ~ 71323276 (+)
vrk2 LOC106576978 coding upstream 458913 71248102 ~ 71266030 (+)
ccdc85a ccdc85a coding upstream 648704 71036440 ~ 71076239 (+)
ddx43 ddx43 coding upstream 1013465 70679883 ~ 70711478 (+)
kcnq5a LOC106576968 coding upstream 1047752 70555702 ~ 70677281 (+)
asrgl1 LOC106576984 coding downstream 239543 71964790 ~ 71978789 (+)
LOC110528701 LOC106576988 coding downstream 283260 72008507 ~ 72040224 (+)
tp53bp2a NA coding downstream 391435 72116682 ~ 72167413 (+)
LOC110532645 NA coding downstream 497070 72222317 ~ 72239625 (+)
LOC118965495 NA coding downstream 503303 72227445 ~ 72229153 (+)
G79855 NA non-coding upstream 29688 71694946 ~ 71695255 (+)
G79838 NA non-coding upstream 51441 71673280 ~ 71673502 (+)
G79797 NA non-coding upstream 85525 71638741 ~ 71639418 (+)
G79792 NA non-coding upstream 93470 71631248 ~ 71631473 (+)
G79785 NA non-coding upstream 97056 71627687 ~ 71627887 (+)
G79882 NA non-coding downstream 68 71725315 ~ 71725519 (+)
G79895 NA non-coding downstream 12464 71737711 ~ 71738333 (+)
G79969 NA non-coding downstream 72383 71797630 ~ 71797884 (+)
G79981 NA non-coding downstream 84467 71809714 ~ 71809915 (+)
G79991 NA non-coding downstream 111358 71836605 ~ 71836853 (+)
G78121 NA other upstream 1069982 70571665 ~ 70654961 (+)
G75747 NA other upstream 3350014 68374505 ~ 68374929 (+)
G74139 NA other upstream 4939974 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 4965959 66756207 ~ 66758984 (+)
G82111 LOC106577091 other downstream 1826369 73551616 ~ 73571737 (+)
G83836 NA other downstream 3183978 74909225 ~ 74909806 (+)
G83829 NA other downstream 3387413 75112660 ~ 75114190 (+)
G83979 NA other downstream 3419617 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 4732877 76457821 ~ 76459823 (+)

Expression


Co-expression Network