G80033


Basic Information

Item Value
gene id G80033
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 71881325 ~ 71973430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU88443
GAgttgcagtcagtctctcctcaactcttagccaagagagactggcatgcatagtatttatatcagccctctgattacaagaGCAAAATGTGCCACTCTTTTCTGGGCCAGCTGctgcttaactaggtctttccttgcagcactggaccacacaactggacaataatcctgataagacaaaactagagcctgcaggacttgctttttggagtgtggtgtcaaaaaagcagagcatctctttattacagacagacctttccccatctttacaaccattgactctatatgttttgaccatgacagtttacaatctaaggtaacaccaagtaatttgttgttcaacagccacaccattcattaccagattcagtggtcagactgccagatgaatAAACCcattttcatgaagctcccgacgaacagttattgtgctgacattgtttccagaggcagtttggaactcggtagtgagtgttgactgtaaatcaaataataattgatttaaacacacttttgcAAATAAggtgtacagtagcctcaacagcaccctATAGGGTAGCACcttggtgtagccggaggacagctcgATTCCGTCCTGCTccaggtacattgacttcaatacaaaacctaggaggctcatggtactcacacccttccatagacttatacagtaattatgacaacttccagaggatgtcctcctgcctatcagagctctttcagtatgaactgacattttgtccacccaatcaaaggatcagagaatgaatctagtactgaaagcgtAAGCTACAGCAAGCTAGCACGGCAGTATATAAAATGTTGAGTAGTTtactcaaagaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88443 True 844 lncRNA 0.50 2 71881325 71973430

Neighbor

gene id symbol gene type direction distance location
LOC110528637 NA coding upstream 558049 71280461 ~ 71323276 (+)
vrk2 LOC106576978 coding upstream 615295 71248102 ~ 71266030 (+)
ccdc85a ccdc85a coding upstream 805086 71036440 ~ 71076239 (+)
ddx43 ddx43 coding upstream 1169847 70679883 ~ 70711478 (+)
kcnq5a LOC106576968 coding upstream 1204134 70555702 ~ 70677281 (+)
LOC110528701 LOC106576988 coding downstream 35077 72008507 ~ 72040224 (+)
tp53bp2a NA coding downstream 143252 72116682 ~ 72167413 (+)
LOC110532645 NA coding downstream 248887 72222317 ~ 72239625 (+)
LOC118965495 NA coding downstream 255120 72227445 ~ 72229153 (+)
polh polh coding downstream 338712 72312142 ~ 72324340 (+)
G80024 NA non-coding upstream 9293 71871738 ~ 71872032 (+)
G79996 NA non-coding upstream 13758 71848330 ~ 71867567 (+)
G79991 NA non-coding upstream 44472 71836605 ~ 71836853 (+)
G79981 NA non-coding upstream 71410 71809714 ~ 71809915 (+)
G79969 NA non-coding upstream 83441 71797630 ~ 71797884 (+)
G80296 NA non-coding downstream 150229 72123659 ~ 72123890 (+)
G80298 NA non-coding downstream 151919 72125349 ~ 72125549 (+)
G80328 LOC106577086 non-coding downstream 202806 72176236 ~ 72266766 (+)
G80324 NA non-coding downstream 273300 72246730 ~ 72248352 (+)
G78121 NA other upstream 1226364 70571665 ~ 70654961 (+)
G75747 NA other upstream 3506396 68374505 ~ 68374929 (+)
G74139 NA other upstream 5096356 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 5122341 66756207 ~ 66758984 (+)
G82111 LOC106577091 other downstream 1578186 73551616 ~ 73571737 (+)
G83836 NA other downstream 2935795 74909225 ~ 74909806 (+)
G83829 NA other downstream 3139230 75112660 ~ 75114190 (+)
G83979 NA other downstream 3171434 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 4484694 76457821 ~ 76459823 (+)

Expression


Co-expression Network