G80934 (LOC106576990)


Basic Information

Item Value
gene id G80934
gene name LOC106576990
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72150787 ~ 72152893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU89420
TTTTCACataatatgttgatgttggggtggtgctggagattaaTATGAAGTAGAAGAATGTTGGATATGTCCCATTAAAATGATACAACTTGGATTAGTAAGCACAAAGTTACTTAAATGGAGAGATGTATCCCAACTCCCCACATTAAGTTAGTTTCAAAATGAAAGAAAAGGGTGTCAGAATCAATAAGACCACCAAATCACCAGGGATTTTCTATTCGTTTGACAGAGGTTCGGTTTTTCTATTAAAATACCTCTGATCGAGAAAATATTTTGCCGACCATGTGTAACGTGAAATGATAATAAATCATAAATCATTCAGTAATAGTTTCAGTGCCAGAGCAAATTCTCCACAACCTCAACCACTTGAGTTTCCATTTTAAACACTCCTCACCCATAAATGTTGTTCTTGTCCACTTATGGCTACAGCACATCTCACATGTCCTGACAATTTCCTCACAAAATCTTTCAAAGACAGAACCCAAGTATTTTTTACATAGATTATGAAAGTGCCATAGAAACCACAGAAGTCAAAAACAACTCAGGGGAAGAGGGGCAGAGGGATATCAGGCAGTGATGTCAGAGCTCAGGCCTGAAACCATCTCCTCTGGAattcctgtctgcctgcctgtgctctagtctccactcctctcctggaGTTGTTTTGCCAAGCTGGGCTGAAGAGAGGGAGTGTTGAGTGTAAACTGAGATAGCAAATCAACTCTGTGACATCAACTCCTTCAATCCTGATCTTTGGGAGCCACCAGGTgcgcaggcttttgctccagacAGGTACTAAAATAACTGAATCAAGTGTTATAGTAGTGGGCTGGGGGGGAAATCTCCCCACTCTGTGAGTCCCAGGGACCAGGATTGAAGAACGCTAAATAGACAGAGATAGAACAAGTGAACTGTGGAAGGAGAGATCAGAGGGTATTTCAGTCCTGTGAGACAGTGATTTGTTTGTCAGTGCAGAAAGGCAGTGAGAGACAGGGTTGAGGAGTCTTACTTTTTTGATAGGGGCCGGCTCTGAGGGCCAGGGCATCTGTGGCTTTCAGAGGTAAACAGAGATACAGTGTGTTTATACTCTCCAGCCCATAGGGGGCGCTCAGGTTATCACTTTTGATTGGGTATGCGTCACTATGTAAATATTTACATTTCTCTGACCAAGTCTTGAAATGTCAAAGTAAGTGTTctgcatccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacactcaCCGGCAGGTTCTCTTTCTGCTGCAGAGCGGCCTTCTTCTTCCAGAGGCGGTCTCGGAGCTCACTGACGCGTTTGTCCATAGAGGCCACCTCCAGGTTGCGCTTGTTCAGACTGTCTCTCTGATGCTGCAGCTTGGCGTTCTGCTCCTGGTTCAGCTTGTTACGCAGCTGCAGCTCCTTGTAGAGGTGGTCCAGCTCAGCCACAGAGCTCTGGTTGTCTTTGAAGCCGTCCATCTTGCCATTCTTGAGCATCTCCAGCTGTCTGTTGAGCTCTTCAACCTTGGACACAGCCACCACCAGCTCTCTCTGCTTCTGTTGGAACAGACCATTCATCTGCTCTatctcctccaCCAGCTTGCCGTTGCTGAGGCGTTT

Function

NR:

description
PREDICTED: apoptosis-stimulating of p53 protein 2-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89420 True 1635 lncRNA 0.46 3 72150787 72152893

Neighbor

gene id symbol gene type direction distance location
smap1 LOC106576989 coding downstream 46760 72041913 ~ 72104027 (-)
LOC110528682 LOC106576986 coding downstream 149527 71994810 ~ 72001260 (-)
LOC110528651 LOC106607091 coding downstream 189058 71896224 ~ 71961729 (-)
bcl11aa bcl11a coding downstream 278595 71824393 ~ 71872192 (-)
LOC118966745 NA coding downstream 341796 71808939 ~ 71808991 (-)
LOC110528822 clm1 coding upstream 23522 72176415 ~ 72193773 (-)
LOC110528794 LOC106576993 coding upstream 49921 72202814 ~ 72251918 (-)
LOC110528758 NA coding upstream 107191 72260084 ~ 72269534 (-)
LOC118965494 LOC106576993 coding upstream 123805 72276698 ~ 72281244 (-)
LOC110528856 gtpbp2 coding upstream 177442 72330335 ~ 72355781 (-)
G80915 NA non-coding downstream 25897 72124677 ~ 72124890 (-)
G80190 NA non-coding downstream 189469 71927506 ~ 71961318 (-)
G80148 NA non-coding downstream 309218 71841320 ~ 71841569 (-)
G80146 NA non-coding downstream 313014 71837529 ~ 71837773 (-)
G80145 NA non-coding downstream 314463 71836098 ~ 71836324 (-)
G80975 NA non-coding upstream 51614 72204507 ~ 72264780 (-)
G81095 NA non-coding upstream 275102 72427995 ~ 72428306 (-)
G81119 NA non-coding upstream 300515 72453408 ~ 72458642 (-)
G81127 NA non-coding upstream 315951 72468844 ~ 72516167 (-)
G79904 NA other downstream 406978 71743045 ~ 71743809 (-)
G79700 NA other downstream 680328 71469435 ~ 71470755 (-)
G79616 NA other downstream 764264 71321950 ~ 71386523 (-)
G78414 NA other downstream 1795196 70354916 ~ 70355591 (-)
LOC118965321 LOC106576963 other downstream 2062073 70082835 ~ 70088715 (-)
G80957 NA other upstream 55036 72207929 ~ 72211089 (-)
G83429 NA other upstream 2419554 74572447 ~ 74572789 (-)
fank1 fank1 other upstream 2819319 74971772 ~ 74975108 (-)
G84713 NA other upstream 3375450 75528343 ~ 75528903 (-)

Expression


Co-expression Network