G80417


Basic Information

Item Value
gene id G80417
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 72344640 ~ 72352263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU88892
atggcagaacactgacattcctgccttgcaggaaatcacacacagaatgagcagtatggcttgtggcaatgtcatgctggagggtgaTGTCAGAATGAACCTGCAGAAAGGGTACCGCATGAGGGAGGAGGTAGCGTTGAGATTGCTTGcaaagctcagtccgatgatgctgtgaccgCCCACCTCCAaaatcgatcccgctccagagtacaggcctcagtgtaacgctcattcctttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88892 True 239 lncRNA 0.52 2 72344640 72352263

Neighbor

gene id symbol gene type direction distance location
polh polh coding upstream 20300 72312142 ~ 72324340 (+)
LOC110532645 NA coding upstream 105015 72222317 ~ 72239625 (+)
LOC118965495 NA coding upstream 115489 72227445 ~ 72229153 (+)
tp53bp2a NA coding upstream 177227 72116682 ~ 72167413 (+)
LOC110528701 LOC106576988 coding upstream 304416 72008507 ~ 72040224 (+)
LOC110528865 otor coding downstream 17950 72370213 ~ 72371779 (+)
pcsk2 pcsk2 coding downstream 67686 72419949 ~ 72508133 (+)
prokr1b LOC106577087 coding downstream 193350 72545613 ~ 72561059 (+)
LOC110528891 LOC106577001 coding downstream 463929 72816192 ~ 73083836 (+)
LOC110528917 NA coding downstream 646973 72999236 ~ 73000231 (+)
G80413 NA non-coding upstream 12061 72326404 ~ 72332579 (+)
G80326 NA non-coding upstream 77113 72250641 ~ 72267527 (+)
G80328 LOC106577086 non-coding upstream 77874 72176236 ~ 72266766 (+)
G80480 NA non-coding downstream 78150 72430413 ~ 72435197 (+)
G81519 NA non-coding downstream 735956 73088219 ~ 73088486 (+)
G81531 NA non-coding downstream 742503 73094766 ~ 73094997 (+)
G81547 NA non-coding downstream 752218 73104481 ~ 73104814 (+)
G81566 NA non-coding downstream 766985 73119248 ~ 73119474 (+)
ccdc85a ccdc85a other upstream 1268538 71036440 ~ 71076239 (+)
G78121 NA other upstream 1689679 70571665 ~ 70654961 (+)
G75747 NA other upstream 3969711 68374505 ~ 68374929 (+)
G74139 NA other upstream 5559671 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 5585656 66756207 ~ 66758984 (+)
G82111 LOC106577091 other downstream 1199353 73551616 ~ 73571737 (+)
G83836 NA other downstream 2556962 74909225 ~ 74909806 (+)
G83829 NA other downstream 2760397 75112660 ~ 75114190 (+)
G83979 NA other downstream 2792601 75144864 ~ 75145512 (+)
LOC110529610 NA other downstream 4105861 76457821 ~ 76459823 (+)

Expression


Co-expression Network